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Christopher S Miller

TitleAsst Professor
InstitutionUniversity of Colorado Denver - Denver Campus
DepartmentCLAS-Biology
Phone303/315-7665

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Narrowe AB, Angle JC, Daly RA, Stefanik KC, Wrighton KC, Miller CS. High-resolution sequencing reveals unexplored archaeal diversity in freshwater wetland soils. Environ Microbiol. 2017 Jun; 19(6):2192-2209. PMID: 28217877.
      View in: PubMed
    2. Mosier AC, Miller CS, Frischkorn KR, Ohm RA, Li Z, LaButti K, Lapidus A, Lipzen A, Chen C, Johnson J, Lindquist EA, Pan C, Hettich RL, Grigoriev IV, Singer SW, Banfield JF. Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage. Front Microbiol. 2016; 7:238. PMID: 26973616; PMCID: PMC4776211.
      View in: PubMed, PubMed Central
    3. Andrade K, Logemann J, Heidelberg KB, Emerson JB, Comolli LR, Hug LA, Probst AJ, Keillar A, Thomas BC, Miller CS, Allen EE, Moreau JW, Brocks JJ, Banfield JF. Metagenomic and lipid analyses reveal a diel cycle in a hypersaline microbial ecosystem. ISME J. 2015 Dec; 9(12):2697-711. PMID: 25918833; PMCID: PMC4817636 [Available on 12/01/16].
      View in: PubMed, PubMed Central
    4. Narrowe AB, Albuthi-Lantz M, Smith EP, Bower KJ, Roane TM, Vajda AM, Miller CS. Perturbation and restoration of the fathead minnow gut microbiome after low-level triclosan exposure. Microbiome. 2015; 3:6. PMID: 25815185; PMCID: PMC4374533.
      View in: PubMed, PubMed Central
    5. Handley KM, Wrighton KC, Miller CS, Wilkins MJ, Kantor RS, Thomas BC, Williams KH, Gilbert JA, Long PE, Banfield JF. Disturbed subsurface microbial communities follow equivalent trajectories despite different structural starting points. Environ Microbiol. 2015 Mar; 17(3):622-36. PMID: 24674078.
      View in: PubMed
    6. Brooks B, Firek BA, Miller CS, Sharon I, Thomas BC, Baker R, Morowitz MJ, Banfield JF. Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants. Microbiome. 2014 Jan 28; 2(1):1. PMID: 24468033; PMCID: PMC4392516.
      View in: PubMed, PubMed Central
    7. Wilkins MJ, Wrighton KC, Nicora CD, Williams KH, McCue LA, Handley KM, Miller CS, Giloteaux L, Montgomery AP, Lovley DR, Banfield JF, Long PE, Lipton MS. Fluctuations in species-level protein expression occur during element and nutrient cycling in the subsurface. PLoS One. 2013; 8(3):e57819. PMID: 23472107; PMCID: PMC3589452.
      View in: PubMed, PubMed Central
    8. Miller CS, Handley KM, Wrighton KC, Frischkorn KR, Thomas BC, Banfield JF. Short-read assembly of full-length 16S amplicons reveals bacterial diversity in subsurface sediments. PLoS One. 2013; 8(2):e56018. PMID: 23405248; PMCID: PMC3566076.
      View in: PubMed, PubMed Central
    9. Miller CS. Assembling full-length rRNA genes from short-read metagenomic sequence datasets using EMIRGE. Methods Enzymol. 2013; 531:333-52. PMID: 24060129.
      View in: PubMed
    10. Handley KM, VerBerkmoes NC, Steefel CI, Williams KH, Sharon I, Miller CS, Frischkorn KR, Chourey K, Thomas BC, Shah MB, Long PE, Hettich RL, Banfield JF. Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community. ISME J. 2013 Apr; 7(4):800-16. PMID: 23190730; PMCID: PMC3603403.
      View in: PubMed, PubMed Central
    11. Wrighton KC, Thomas BC, Sharon I, Miller CS, Castelle CJ, VerBerkmoes NC, Wilkins MJ, Hettich RL, Lipton MS, Williams KH, Long PE, Banfield JF. Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla. Science. 2012 Sep 28; 337(6102):1661-5. PMID: 23019650.
      View in: PubMed
    12. Justice NB, Pan C, Mueller R, Spaulding SE, Shah V, Sun CL, Yelton AP, Miller CS, Thomas BC, Shah M, VerBerkmoes N, Hettich R, Banfield JF. Heterotrophic archaea contribute to carbon cycling in low-pH, suboxic biofilm communities. Appl Environ Microbiol. 2012 Dec; 78(23):8321-30. PMID: 23001646; PMCID: PMC3497393.
      View in: PubMed, PubMed Central
    13. Fujishima K, Sugahara J, Miller CS, Baker BJ, Di Giulio M, Takesue K, Sato A, Tomita M, Banfield JF, Kanai A. A novel three-unit tRNA splicing endonuclease found in ultrasmall Archaea possesses broad substrate specificity. Nucleic Acids Res. 2011 Dec; 39(22):9695-704. PMID: 21880595; PMCID: PMC3239211.
      View in: PubMed, PubMed Central
    14. Gladden JM, Allgaier M, Miller CS, Hazen TC, VanderGheynst JS, Hugenholtz P, Simmons BA, Singer SW. Glycoside hydrolase activities of thermophilic bacterial consortia adapted to switchgrass. Appl Environ Microbiol. 2011 Aug 15; 77(16):5804-12. PMID: 21724886; PMCID: PMC3165268.
      View in: PubMed, PubMed Central
    15. Miller CS, Baker BJ, Thomas BC, Singer SW, Banfield JF. EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data. Genome Biol. 2011; 12(5):R44. PMID: 21595876; PMCID: PMC3219967.
      View in: PubMed, PubMed Central
    16. Cruz D, Watson AD, Miller CS, Montoya D, Ochoa MT, Sieling PA, Gutierrez MA, Navab M, Reddy ST, Witztum JL, Fogelman AM, Rea TH, Eisenberg D, Berliner J, Modlin RL. Host-derived oxidized phospholipids and HDL regulate innate immunity in human leprosy. J Clin Invest. 2008 Aug; 118(8):2917-28. PMID: 18636118; PMCID: PMC2467381.
      View in: PubMed, PubMed Central
    17. Miller CS, Eisenberg D. Using inferred residue contacts to distinguish between correct and incorrect protein models. Bioinformatics. 2008 Jul 15; 24(14):1575-82. PMID: 18511466; PMCID: PMC2638260.
      View in: PubMed, PubMed Central
    18. Williamson SJ, Rusch DB, Yooseph S, Halpern AL, Heidelberg KB, Glass JI, Andrews-Pfannkoch C, Fadrosh D, Miller CS, Sutton G, Frazier M, Venter JC. The Sorcerer II Global Ocean Sampling Expedition: metagenomic characterization of viruses within aquatic microbial samples. PLoS One. 2008 Jan 23; 3(1):e1456. PMID: 18213365; PMCID: PMC2186209.
      View in: PubMed, PubMed Central
    19. Yooseph S, Sutton G, Rusch DB, Halpern AL, Williamson SJ, Remington K, Eisen JA, Heidelberg KB, Manning G, Li W, Jaroszewski L, Cieplak P, Miller CS, Li H, Mashiyama ST, Joachimiak MP, van Belle C, Chandonia JM, Soergel DA, Zhai Y, Natarajan K, Lee S, Raphael BJ, Bafna V, Friedman R, Brenner SE, Godzik A, Eisenberg D, Dixon JE, Taylor SS, Strausberg RL, Frazier M, Venter JC. The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families. PLoS Biol. 2007 Mar; 5(3):e16. PMID: 17355171; PMCID: PMC1821046.
      View in: PubMed, PubMed Central
    20. Salwinski L, Miller CS, Smith AJ, Pettit FK, Bowie JU, Eisenberg D. The Database of Interacting Proteins: 2004 update. Nucleic Acids Res. 2004 Jan 01; 32(Database issue):D449-51. PMID: 14681454; PMCID: PMC308820.
      View in: PubMed, PubMed Central
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