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Arthi Jayaraman

TitleAffiliate
InstitutionUniversity of Colorado Boulder
DepartmentChemical & Biological Engin
Phone303/492-3087

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Condon JE, Martin TB, Jayaraman A. Effect of conjugation on phase transitions in thermoresponsive polymers: an atomistic and coarse-grained simulation study. Soft Matter. 2017 Apr 19; 13(16):2907-2918. PMID: 28217775.
      View in: PubMed
    2. Gartner TE, Epps TH, Jayaraman A. Leveraging Gibbs Ensemble Molecular Dynamics and Hybrid Monte Carlo/Molecular Dynamics for Efficient Study of Phase Equilibria. J Chem Theory Comput. 2016 Nov 08; 12(11):5501-5510. PMID: 27685170.
      View in: PubMed
    3. Ghobadi AF, Jayaraman A. Effects of Polymer Conjugation on Hybridization Thermodynamics of Oligonucleic Acids. J Phys Chem B. 2016 Sep 15; 120(36):9788-99. PMID: 27598692.
      View in: PubMed
    4. Stanzione F, Jayaraman A. Hybrid Atomistic and Coarse-Grained Molecular Dynamics Simulations of Polyethylene Glycol (PEG) in Explicit Water. J Phys Chem B. 2016 05 05; 120(17):4160-73. PMID: 27108869.
      View in: PubMed
    5. Ghobadi AF, Jayaraman A. Effect of backbone chemistry on hybridization thermodynamics of oligonucleic acids: a coarse-grained molecular dynamics simulation study. Soft Matter. 2016 Feb 28; 12(8):2276-87. PMID: 26777980.
      View in: PubMed
    6. Ghobadi AF, Letteri R, Parelkar SS, Zhao Y, Chan-Seng D, Emrick T, Jayaraman A. Dispersing Zwitterions into Comb Polymers for Nonviral Transfection: Experiments and Molecular Simulation. Biomacromolecules. 2016 Feb 08; 17(2):546-57. PMID: 26741292.
      View in: PubMed
    7. Stanzione F, Jayaraman A. Computational Design of Oligopeptide Containing Poly(ethylene glycol) Brushes for Stimuli-Responsive Drug Delivery. J Phys Chem B. 2015 Oct 22; 119(42):13309-20. PMID: 26420472; PMCID: PMC4944847.
    8. Martin TB, Mongcopa KI, Ashkar R, Butler P, Krishnamoorti R, Jayaraman A. Wetting-Dewetting and Dispersion-Aggregation Transitions Are Distinct for Polymer Grafted Nanoparticles in Chemically Dissimilar Polymer Matrix. J Am Chem Soc. 2015 Aug 26; 137(33):10624-31. PMID: 26237522.
      View in: PubMed
    9. Elder RM, Pfaendtner J, Jayaraman A. Effect of Hydrophobic and Hydrophilic Surfaces on the Stability of Double-Stranded DNA. Biomacromolecules. 2015 Jun 08; 16(6):1862-9. PMID: 25961882.
      View in: PubMed
    10. Zhang L, Liu F, Diao Y, Marsh HS, Colella NS, Jayaraman A, Russell TP, Mannsfeld SC, Briseno AL. The good host: formation of discrete one-dimensional fullerene "channels" in well-ordered poly(2,5-bis(3-alkylthiophen-2-yl)thieno[3,2-b]thiophene) oligomers. J Am Chem Soc. 2014 Dec 31; 136(52):18120-30. PMID: 25420871.
      View in: PubMed
    11. Estridge CE, Jayaraman A. Assembly of diblock copolymer functionalized spherical nanoparticles as a function of copolymer composition. J Chem Phys. 2014 Apr 14; 140(14):144905. PMID: 24735316.
      View in: PubMed
    12. Roberts JJ, Elder RM, Neumann AJ, Jayaraman A, Bryant SJ. Interaction of hyaluronan binding peptides with glycosaminoglycans in poly(ethylene glycol) hydrogels. Biomacromolecules. 2014 Apr 14; 15(4):1132-41. PMID: 24597474; PMCID: PMC3993952.
    13. Elder RM, Jayaraman A. Molecular simulations of polycation-DNA binding exploring the effect of peptide chemistry and sequence in nuclear localization sequence based polycations. J Phys Chem B. 2013 Oct 10; 117(40):11988-99. PMID: 24067060.
      View in: PubMed
    14. Martin TB, Dodd PM, Jayaraman A. Polydispersity for tuning the potential of mean force between polymer grafted nanoparticles in a polymer matrix. Phys Rev Lett. 2013 Jan 04; 110(1):018301. PMID: 23383845.
      View in: PubMed
    15. Elder RM, Jayaraman A. Sequence-specific recognition of cancer drug-DNA adducts by HMGB1a repair protein. Biophys J. 2012 May 16; 102(10):2331-8. PMID: 22677386; PMCID: PMC3353062.
    16. Elder RM, Emrick T, Jayaraman A. Understanding the effect of polylysine architecture on DNA binding using molecular dynamics simulations. Biomacromolecules. 2011 Nov 14; 12(11):3870-9. PMID: 21961938.
      View in: PubMed
    17. Nair N, Wentzel N, Jayaraman A. Effect of bidispersity in grafted chain length on grafted chain conformations and potential of mean force between polymer grafted nanoparticles in a homopolymer matrix. J Chem Phys. 2011 May 21; 134(19):194906. PMID: 21599087.
      View in: PubMed
    18. Seifpour A, Spicer P, Nair N, Jayaraman A. Effect of monomer sequences on conformations of copolymers grafted on spherical nanoparticles: a Monte Carlo simulation study. J Chem Phys. 2010 Apr 28; 132(16):164901. PMID: 20441304.
      View in: PubMed
    19. Jayaraman A, Schweizer KS. Effect of the number and placement of polymer tethers on the structure of concentrated solutions and melts of hybrid nanoparticles. Langmuir. 2008 Oct 07; 24(19):11119-30. PMID: 18729491.
      View in: PubMed
    20. Jayaraman A, Schweizer KS. Structure and assembly of dense solutions and melts of single tethered nanoparticles. J Chem Phys. 2008 Apr 28; 128(16):164904. PMID: 18447497.
      View in: PubMed
    21. Jayaraman A, Hall CK, Genzer J. Computer simulation study of probe-target hybridization in model DNA microarrays: effect of probe surface density and target concentration. J Chem Phys. 2007 Oct 14; 127(14):144912. PMID: 17935444.
      View in: PubMed
    22. Jayaraman A, Santiso EE, Hall CK, Genzer J. Theoretical study of kinetics of zipping phenomena in biomimetic polymers. Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Jul; 76(1 Pt 1):011915. PMID: 17677502.
      View in: PubMed
    23. Jayaraman A, Hall CK, Genzer J. Computer simulation study of molecular recognition in model DNA microarrays. Biophys J. 2006 Sep 15; 91(6):2227-36. PMID: 16940474; PMCID: PMC1557571.
    24. Jayaraman A, Hall CK, Genzer J. Designing pattern-recognition surfaces for selective adsorption of copolymer sequences using lattice monte carlo simulation. Phys Rev Lett. 2005 Feb 25; 94(7):078103. PMID: 15783859.
      View in: PubMed
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