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Kevin Bretonnel Cohen

TitleInstructor
InstitutionUniversity of Colorado Denver - Anschutz Medical Campus
DepartmentSOM-BIOMED Informatics Gen Ops

    Collapse Research 
    Collapse research activities and funding
    R13GM109648     (COHEN, KEVIN B.)Sep 1, 2014 - Aug 31, 2018
    NIH
    Biocreative Conference Grant
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Zhou K, Zhang S, Wang Y, Cohen KB, Kim JD, Luo Q, Yao X, Zhou X, Xia J. High-quality gene/disease embedding in a multi-relational heterogeneous graph after a joint matrix/tensor decomposition. J Biomed Inform. 2022 02; 126:103973. PMID: 34995810.
      View in: PubMed
    2. Kim JD, Cohen KB, Rinaldi F, Lu Z, Park HS. Editor's introduction to the special section on the 7th Biomedical Linked Annotation Hackathon (BLAH7). Genomics Inform. 2021 Sep; 19(3):e20. PMID: 34638167.
      View in: PubMed
    3. Korach ZT, Gradwohl S, Messinger A, Bookman K, Cohen K, Zhou L, Goss F. Unsupervised clinical relevancy ranking of structured medical records to retrieve condition-specific information in the emergency department. Int J Med Inform. 2021 05; 149:104410. PMID: 33621793.
      View in: PubMed
    4. Neuraz A, Lerner I, Digan W, Paris N, Tsopra R, Rogier A, Baudoin D, Cohen KB, Burgun A, Garcelon N, Rance B. Natural Language Processing for Rapid Response to Emergent Diseases: Case Study of Calcium Channel Blockers and Hypertension in the COVID-19 Pandemic. J Med Internet Res. 2020 Aug 14; 22(8):e20773. PMID: 32759101.
      View in: PubMed
    5. Kim JD, Cohen KB, Rinaldi F, Lu Z, Collier N, Park HS. Editor's introduction to the special issue of the 6th Biomedical Linked Annotation Hackathon (BLAH6). Genomics Inform. 2020 Jun; 18(2):e12. PMID: 32634866.
      View in: PubMed
    6. Pestian J, Santel D, Sorter M, Bayram U, Connolly B, Glauser T, DelBello M, Tamang S, Cohen K. A Machine Learning Approach to Identifying Changes in Suicidal Language. Suicide Life Threat Behav. 2020 10; 50(5):939-947. PMID: 32484597.
      View in: PubMed
    7. Vos RA, Katayama T, Mishima H, Kawano S, Kawashima S, Kim JD, Moriya Y, Tokimatsu T, Yamaguchi A, Yamamoto Y, Wu H, Amstutz P, Antezana E, Aoki NP, Arakawa K, Bolleman JT, Bolton E, Bonnal RJP, Bono H, Burger K, Chiba H, Cohen KB, Deutsch EW, Fern?ndez-Breis JT, Fu G, Fujisawa T, Fukushima A, Garc?a A, Goto N, Groza T, Hercus C, Hoehndorf R, Itaya K, Juty N, Kawashima T, Kim JH, Kinjo AR, Kotera M, Kozaki K, Kumagai S, Kushida T, L?tteke T, Matsubara M, Miyamoto J, Mohsen A, Mori H, Naito Y, Nakazato T, Nguyen-Xuan J, Nishida K, Nishida N, Nishide H, Ogishima S, Ohta T, Okuda S, Paten B, Perret JL, Prathipati P, Prins P, Queralt-Rosinach N, Shinmachi D, Suzuki S, Tabata T, Takatsuki T, Taylor K, Thompson M, Uchiyama I, Vieira B, Wei CH, Wilkinson M, Yamada I, Yamanaka R, Yoshitake K, Yoshizawa AC, Dumontier M, Kosaki K, Takagi T. BioHackathon 2015: Semantics of data for life sciences and reproducible research. F1000Res. 2020; 9:136. PMID: 32308977.
      View in: PubMed
    8. Kim JD, Cohen KB, Collier N, Lu Z, Rinaldi F. Introduction to BLAH5 special issue: recent progress on interoperability of biomedical text mining. Genomics Inform. 2019 Jun; 17(2):e12. PMID: 31307127.
      View in: PubMed
    9. Pressman PS, Ross ED, Cohen KB, Chen KH, Miller BL, Hunter LE, Gorno-Tempini ML, Levenson RW. Interpersonal prosodic correlation in frontotemporal dementia. Ann Clin Transl Neurol. 2019 07; 6(7):1352-1357. PMID: 31353851.
      View in: PubMed
    10. Zhou KY, Wang YX, Zhang S, Gachloo M, Kim JD, Luo Q, Cohen KB, Xia JB. GOF/LOF knowledge inference with tensor decomposition in support of high order link discovery for gene, mutation and disease. Math Biosci Eng. 2019 02 20; 16(3):1376-1391. PMID: 30947425.
      View in: PubMed
    11. Boguslav M, Cohen KB. Inter-Annotator Agreement and the Upper Limit on Machine Performance: Evidence from Biomedical Natural Language Processing. Stud Health Technol Inform. 2017; 245:298-302. PMID: 29295103.
      View in: PubMed
    12. Hirschman L, Fort K, Bou? S, Kyrpides N, Islamaj Dogan R, Cohen KB. Crowdsourcing and curation: perspectives from biology and natural language processing. Database (Oxford). 2016; 2016. PMID: 27504010.
      View in: PubMed
    13. Cohen KB, Glass B, Greiner HM, Holland-Bouley K, Standridge S, Arya R, Faist R, Morita D, Mangano F, Connolly B, Glauser T, Pestian J. Methodological Issues in Predicting Pediatric Epilepsy Surgery Candidates Through Natural Language Processing and Machine Learning. Biomed Inform Insights. 2016; 8:11-8. PMID: 27257386.
      View in: PubMed
    14. Pattin KA, Greene AC, Altman RB, Cohen KB, Wethington E, G?rg C, Hunter LE, Muse SV, Radivojac P, Moore JH. Training the next generation of quantitative biologists in the era of big data. Pac Symp Biocomput. 2015; 488-92. PMID: 25592609.
      View in: PubMed
    15. Arighi CN, Wu CH, Cohen KB, Hirschman L, Krallinger M, Valencia A, Lu Z, Wilbur JW, Wiegers TC. BioCreative-IV virtual issue. Database (Oxford). 2014; 2014. PMID: 24852177.
      View in: PubMed
    16. Comeau DC, Islamaj Dogan R, Ciccarese P, Cohen KB, Krallinger M, Leitner F, Lu Z, Peng Y, Rinaldi F, Torii M, Valencia A, Verspoor K, Wiegers TC, Wu CH, Wilbur WJ. BioC: a minimalist approach to interoperability for biomedical text processing. Database (Oxford). 2013; 2013:bat064. PMID: 24048470.
      View in: PubMed
    17. Li Q, Deleger L, Lingren T, Zhai H, Kaiser M, Stoutenborough L, Jegga AG, Cohen KB, Solti I. Mining FDA drug labels for medical conditions. BMC Med Inform Decis Mak. 2013 Apr 24; 13:53. PMID: 23617267.
      View in: PubMed
    18. Gonzalez G, Cohen KB, Greene CS, Hahn U, Kann MG, Leaman R, Shah N, Ye J. Text and data mining for biomedical discovery. Pac Symp Biocomput. 2013; 2013:368-72. PMID: 23424141.
      View in: PubMed
    19. Wu CH, Arighi CN, Cohen KB, Hirschman L, Krallinger M, Lu Z, Mattingly C, Valencia A, Wiegers TC, John Wilbur W. BioCreative-2012 virtual issue. Database (Oxford). 2012; 2012:bas049. PMID: 23221175.
      View in: PubMed
    20. Verspoor K, Cohen KB, Lanfranchi A, Warner C, Johnson HL, Roeder C, Choi JD, Funk C, Malenkiy Y, Eckert M, Xue N, Baumgartner WA, Bada M, Palmer M, Hunter LE. A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools. BMC Bioinformatics. 2012 Aug 17; 13:207. PMID: 22901054.
      View in: PubMed
    21. Arighi CN, Lu Z, Krallinger M, Cohen KB, Wilbur WJ, Valencia A, Hirschman L, Wu CH. Overview of the BioCreative III Workshop. BMC Bioinformatics. 2011 Oct 03; 12 Suppl 8:S1. PMID: 22151647.
      View in: PubMed
    22. Zweigenbaum P, Demner-Fushman D, Yu H, Cohen KB. Frontiers of biomedical text mining: current progress. Brief Bioinform. 2007 Sep; 8(5):358-75. PMID: 17977867.
      View in: PubMed
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