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Jessica Lynne Metcalf

TitleSr Research Associate
InstitutionUniversity of Colorado Boulder
DepartmentEcology & Evolutionary Biology
ORCID ORCID Icon0000-0001-8374-8046 Additional info

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. McDonald D, Hyde E, Debelius JW, Morton JT, Gonzalez A, Ackermann G, Aksenov AA, Behsaz B, Brennan C, Chen Y, DeRight Goldasich L, Dorrestein PC, Dunn RR, Fahimipour AK, Gaffney J, Gilbert JA, Gogul G, Green JL, Hugenholtz P, Humphrey G, Huttenhower C, Jackson MA, Janssen S, Jeste DV, Jiang L, Kelley ST, Knights D, Kosciolek T, Ladau J, Leach J, Marotz C, Meleshko D, Melnik AV, Metcalf JL, Mohimani H, Montassier E, Navas-Molina J, Nguyen TT, Peddada S, Pevzner P, Pollard KS, Rahnavard G, Robbins-Pianka A, Sangwan N, Shorenstein J, Smarr L, Song SJ, Spector T, Swafford AD, Thackray VG, Thompson LR, Tripathi A, Vázquez-Baeza Y, Vrbanac A, Wischmeyer P, Wolfe E, Zhu Q, Knight R. American Gut: an Open Platform for Citizen Science Microbiome Research. mSystems. 2018 May-Jun; 3(3). PMID: 29795809.
      View in: PubMed
    2. Belk A, Xu ZZ, Carter DO, Lynne A, Bucheli S, Knight R, Metcalf JL. Microbiome Data Accurately Predicts the Postmortem Interval Using Random Forest Regression Models. Genes (Basel). 2018 Feb 16; 9(2). PMID: 29462950.
      View in: PubMed
    3. Boast AP, Weyrich LS, Wood JR, Metcalf JL, Knight R, Cooper A. Coprolites reveal ecological interactions lost with the extinction of New Zealand birds. Proc Natl Acad Sci U S A. 2018 Feb 13; 115(7):1546-1551. PMID: 29440415.
      View in: PubMed
    4. Morton JT, Toran L, Edlund A, Metcalf JL, Lauber C, Knight R. Correction for Morton et al., "Uncovering the Horseshoe Effect in Microbial Analyses". mSystems. 2018 Jan-Feb; 3(1). PMID: 29435495.
      View in: PubMed
    5. Metcalf JL, Song SJ, Morton JT, Weiss S, Seguin-Orlando A, Joly F, Feh C, Taberlet P, Coissac E, Amir A, Willerslev E, Knight R, McKenzie V, Orlando L. Evaluating the impact of domestication and captivity on the horse gut microbiome. Sci Rep. 2017 Nov 14; 7(1):15497. PMID: 29138485.
      View in: PubMed
    6. McKenzie VJ, Song SJ, Delsuc F, Prest TL, Oliverio AM, Korpita TM, Alexiev A, Amato KR, Metcalf JL, Kowalewski M, Avenant NL, Link A, Di Fiore A, Seguin-Orlando A, Feh C, Orlando L, Mendelson JR, Sanders J, Knight R. The Effects of Captivity on the Mammalian Gut Microbiome. Integr Comp Biol. 2017 Oct 01; 57(4):690-704. PMID: 28985326.
      View in: PubMed
    7. Metcalf JL, Xu ZZ, Bouslimani A, Dorrestein P, Carter DO, Knight R. Microbiome Tools for Forensic Science. Trends Biotechnol. 2017 09; 35(9):814-823. PMID: 28366290.
      View in: PubMed
    8. Morton JT, Toran L, Edlund A, Metcalf JL, Lauber C, Knight R. Uncovering the Horseshoe Effect in Microbial Analyses. mSystems. 2017 Jan-Feb; 2(1). PMID: 28251186.
      View in: PubMed
    9. Morton JT, Sanders J, Quinn RA, McDonald D, Gonzalez A, Vázquez-Baeza Y, Navas-Molina JA, Song SJ, Metcalf JL, Hyde ER, Lladser M, Dorrestein PC, Knight R. Balance Trees Reveal Microbial Niche Differentiation. mSystems. 2017 Jan-Feb; 2(1). PMID: 28144630.
      View in: PubMed
    10. Metcalf JL, Carter DO, Knight R. Microbiology of death. Curr Biol. 2016 07 11; 26(13):R561-R563. PMID: 27404249.
      View in: PubMed
    11. Metcalf JL, Turney C, Barnett R, Martin F, Bray SC, Vilstrup JT, Orlando L, Salas-Gismondi R, Loponte D, Medina M, De Nigris M, Civalero T, Fernández PM, Gasco A, Duran V, Seymour KL, Otaola C, Gil A, Paunero R, Prevosti FJ, Bradshaw CJ, Wheeler JC, Borrero L, Austin JJ, Cooper A. Synergistic roles of climate warming and human occupation in Patagonian megafaunal extinctions during the Last Deglaciation. Sci Adv. 2016 06; 2(6):e1501682. PMID: 27386563; PMCID: PMC4928889.
    12. Song SJ, Amir A, Metcalf JL, Amato KR, Xu ZZ, Humphrey G, Knight R. Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies. mSystems. 2016 May-Jun; 1(3). PMID: 27822526.
      View in: PubMed
    13. Metcalf JL, Xu ZZ, Weiss S, Lax S, Van Treuren W, Hyde ER, Song SJ, Amir A, Larsen P, Sangwan N, Haarmann D, Humphrey GC, Ackermann G, Thompson LR, Lauber C, Bibat A, Nicholas C, Gebert MJ, Petrosino JF, Reed SC, Gilbert JA, Lynne AM, Bucheli SR, Carter DO, Knight R. Microbial community assembly and metabolic function during mammalian corpse decomposition. Science. 2016 Jan 08; 351(6269):158-62. PMID: 26657285.
      View in: PubMed
    14. Weiss S, Carter DO, Metcalf JL, Knight R. Carcass mass has little influence on the structure of gravesoil microbial communities. Int J Legal Med. 2016 Jan; 130(1):253-63. PMID: 26024793.
      View in: PubMed
    15. Carter DO, Metcalf JL, Bibat A, Knight R. Seasonal variation of postmortem microbial communities. Forensic Sci Med Pathol. 2015 Jun; 11(2):202-7. PMID: 25737335.
      View in: PubMed
    16. Llamas B, Brotherton P, Mitchell KJ, Templeton JE, Thomson VA, Metcalf JL, Armstrong KN, Kasper M, Richards SM, Camens AB, Lee MS, Cooper A. Late pleistocene Australian marsupial DNA clarifies the affinities of extinct megafaunal kangaroos and wallabies. Mol Biol Evol. 2015 Mar; 32(3):574-84. PMID: 25526902.
      View in: PubMed
    17. Weiss S, Amir A, Hyde ER, Metcalf JL, Song SJ, Knight R. Tracking down the sources of experimental contamination in microbiome studies. Genome Biol. 2014 Dec 17; 15(12):564. PMID: 25608874; PMCID: PMC4311479.
    18. Lax S, Smith DP, Hampton-Marcell J, Owens SM, Handley KM, Scott NM, Gibbons SM, Larsen P, Shogan BD, Weiss S, Metcalf JL, Ursell LK, Vázquez-Baeza Y, Van Treuren W, Hasan NA, Gibson MK, Colwell R, Dantas G, Knight R, Gilbert JA. Longitudinal analysis of microbial interaction between humans and the indoor environment. Science. 2014 Aug 29; 345(6200):1048-52. PMID: 25170151; PMCID: PMC4337996.
    19. Lauber CL, Metcalf JL, Keepers K, Ackermann G, Carter DO, Knight R. Vertebrate decomposition is accelerated by soil microbes. Appl Environ Microbiol. 2014 Aug; 80(16):4920-9. PMID: 24907317; PMCID: PMC4135757.
    20. Metcalf JL, Ursell LK, Knight R. Ancient human oral plaque preserves a wealth of biological data. Nat Genet. 2014 Apr; 46(4):321-3. PMID: 24675519.
      View in: PubMed
    21. Metcalf JL, Prost S, Nogués-Bravo D, DeChaine EG, Anderson C, Batra P, Araújo MB, Cooper A, Guralnick RP. Integrating multiple lines of evidence into historical biogeography hypothesis testing: a Bison bison case study. Proc Biol Sci. 2014 Feb 22; 281(1777):20132782. PMID: 24403338; PMCID: PMC3896022.
    22. Metcalf JL, Wegener Parfrey L, Gonzalez A, Lauber CL, Knights D, Ackermann G, Humphrey GC, Gebert MJ, Van Treuren W, Berg-Lyons D, Keepers K, Guo Y, Bullard J, Fierer N, Carter DO, Knight R. A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system. Elife. 2013 Oct 15; 2:e01104. PMID: 24137541; PMCID: PMC3796315.
    23. Delsuc F, Metcalf JL, Wegener Parfrey L, Song SJ, González A, Knight R. Convergence of gut microbiomes in myrmecophagous mammals. Mol Ecol. 2014 Mar; 23(6):1301-17. PMID: 24118574.
      View in: PubMed
    24. Ursell LK, Van Treuren W, Metcalf JL, Pirrung M, Gewirtz A, Knight R. Replenishing our defensive microbes. Bioessays. 2013 Sep; 35(9):810-7. PMID: 23836415; PMCID: PMC4102301.
    25. McFall-Ngai M, Hadfield MG, Bosch TC, Carey HV, Domazet-Lošo T, Douglas AE, Dubilier N, Eberl G, Fukami T, Gilbert SF, Hentschel U, King N, Kjelleberg S, Knoll AH, Kremer N, Mazmanian SK, Metcalf JL, Nealson K, Pierce NE, Rawls JF, Reid A, Ruby EG, Rumpho M, Sanders JG, Tautz D, Wernegreen JJ. Animals in a bacterial world, a new imperative for the life sciences. Proc Natl Acad Sci U S A. 2013 Feb 26; 110(9):3229-36. PMID: 23391737; PMCID: PMC3587249.
    26. Ursell LK, Metcalf JL, Parfrey LW, Knight R. Defining the human microbiome. Nutr Rev. 2012 Aug; 70 Suppl 1:S38-44. PMID: 22861806; PMCID: PMC3426293.
    27. Gonzalez A, King A, Robeson MS, Song S, Shade A, Metcalf JL, Knight R. Characterizing microbial communities through space and time. Curr Opin Biotechnol. 2012 Jun; 23(3):431-6. PMID: 22154467; PMCID: PMC3311466.
    28. Gonzalez A, Clemente JC, Shade A, Metcalf JL, Song S, Prithiviraj B, Palmer BE, Knight R. Our microbial selves: what ecology can teach us. EMBO Rep. 2011 Jul 01; 12(8):775-84. PMID: 21720391; PMCID: PMC3147266.
    29. Orlando L, Metcalf JL, Alberdi MT, Telles-Antunes M, Bonjean D, Otte M, Martin F, Eisenmann V, Mashkour M, Morello F, Prado JL, Salas-Gismondi R, Shockey BJ, Wrinn PJ, Vasil'ev SK, Ovodov ND, Cherry MI, Hopwood B, Male D, Austin JJ, Hänni C, Cooper A. Revising the recent evolutionary history of equids using ancient DNA. Proc Natl Acad Sci U S A. 2009 Dec 22; 106(51):21754-9. PMID: 20007379; PMCID: PMC2799835.
    30. Osborne AS, Som P, Metcalf JL, Phillips RS. Regioselective nitration of N(alpha),N(1)-bis(trifluoroacetyl)-L-tryptophan methyl ester: efficient synthesis of 2-nitro and 6-nitro-N-trifluoroacetyl-L-tryptophan methyl ester. Bioorg Med Chem Lett. 2008 Nov 01; 18(21):5750-2. PMID: 18851915; PMCID: PMC4335804.
    31. Metcalf JL, Siegle MR, Martin AP. Hybridization dynamics between Colorado's native cutthroat trout and introduced rainbow trout. J Hered. 2008 Mar-Apr; 99(2):149-56. PMID: 18238784.
      View in: PubMed
    32. Metcalf JL, Pritchard VL, Silvestri SM, Jenkins JB, Wood JS, Cowley DE, Evans RP, Shiozawa DK, Martin AP. Across the great divide: genetic forensics reveals misidentification of endangered cutthroat trout populations. Mol Ecol. 2007 Nov; 16(21):4445-54. PMID: 17727621.
      View in: PubMed
    33. Freiburger BJ, Breed MD, Metcalf JL. Mating frequency, within-colony relatedness and male production in a yellow jacket wasp, Dolichovespula arenaria. Mol Ecol. 2004 Dec; 13(12):3703-7. PMID: 15548284.
      View in: PubMed
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