Colorado PROFILES, The Colorado Clinical and Translational Sciences Institute (CCTSI)
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Connection

Co-Authors

This is a "connection" page, showing publications co-authored by Lawrence Hunter and Kevin Cohen.

 
Connection Strength
 
 
 
10.609
 
  1. Cohen KB, Xia J, Zweigenbaum P, Callahan TJ, Hargraves O, Goss F, Ide N, Névéol A, Grouin C, Hunter LE. Three Dimensions of Reproducibility in Natural Language Processing. LREC Int Conf Lang Resour Eval. 2018 May; 2018:156-165.
    View in: PubMed
    Score: 0.785
  2. Cohen KB, Lanfranchi A, Choi MJ, Bada M, Baumgartner WA, Panteleyeva N, Verspoor K, Palmer M, Hunter LE. Coreference annotation and resolution in the Colorado Richly Annotated Full Text (CRAFT) corpus of biomedical journal articles. BMC Bioinformatics. 2017 Aug 17; 18(1):372.
    View in: PubMed
    Score: 0.748
  3. Cohen KB, Goss FR, Zweigenbaum P, Hunter LE. Translational Morphosyntax: Distribution of Negation in Clinical Records and Biomedical Journal Articles. Stud Health Technol Inform. 2017; 245:346-350.
    View in: PubMed
    Score: 0.716
  4. Cohen KB, Xia J, Roeder C, Hunter LE. Reproducibility in Natural Language Processing: A Case Study of Two R Libraries for Mining PubMed/MEDLINE. LREC Int Conf Lang Resour Eval. 2016 May; 2016(W23):6-12.
    View in: PubMed
    Score: 0.684
  5. Cohen KB, Hunter LE. Chapter 16: text mining for translational bioinformatics. PLoS Comput Biol. 2013 Apr; 9(4):e1003044.
    View in: PubMed
    Score: 0.555
  6. Cohen KB, Verspoor K, Johnson HL, Roeder C, Ogren PV, Baumgartner WA, White E, Tipney H, Hunter L. HIGH-PRECISION BIOLOGICAL EVENT EXTRACTION: EFFECTS OF SYSTEM AND OF DATA. Comput Intell. 2011 Nov; 27(4):681-701.
    View in: PubMed
    Score: 0.501
  7. Cohen KB, Christiansen T, Hunter LE. Parenthetically speaking: classifying the contents of parentheses for text mining. AMIA Annu Symp Proc. 2011; 2011:267-72.
    View in: PubMed
    Score: 0.500
  8. Cohen KB, Christiansen T, Hunter LE. MetaMap is a superior baseline to a standard document retrieval engine for the task of finding patient cohorts in clinical free text. Text Retr Conf. 2011; 2011.
    View in: PubMed
    Score: 0.472
  9. Cohen KB, Johnson HL, Verspoor K, Roeder C, Hunter LE. The structural and content aspects of abstracts versus bodies of full text journal articles are different. BMC Bioinformatics. 2010 Sep 29; 11:492.
    View in: PubMed
    Score: 0.464
  10. Cohen KB, Palmer M, Hunter L. Nominalization and alternations in biomedical language. PLoS One. 2008 Sep 09; 3(9):e3158.
    View in: PubMed
    Score: 0.403
  11. Hunter L, Lu Z, Firby J, Baumgartner WA, Johnson HL, Ogren PV, Cohen KB. OpenDMAP: an open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression. BMC Bioinformatics. 2008 Jan 31; 9:78.
    View in: PubMed
    Score: 0.386
  12. Cohen KB, Hunter L. Getting started in text mining. PLoS Comput Biol. 2008 Jan; 4(1):e20.
    View in: PubMed
    Score: 0.384
  13. Cohen KB, Hunter L. A critical review of PASBio's argument structures for biomedical verbs. BMC Bioinformatics. 2006 Nov 24; 7 Suppl 3:S5.
    View in: PubMed
    Score: 0.355
  14. Hunter L, Cohen KB. Biomedical language processing: what's beyond PubMed? Mol Cell. 2006 Mar 03; 21(5):589-94.
    View in: PubMed
    Score: 0.338
  15. Cohen KB, Fox L, Ogren P, Hunter L. Empirical data on corpus design and usage in biomedical natural language processing. AMIA Annu Symp Proc. 2005; 156-60.
    View in: PubMed
    Score: 0.312
  16. Cohen KB, Hunter LE, Pressman PS. P-Hacking Lexical Richness Through Definitions of "Type" and "Token". Stud Health Technol Inform. 2019 Aug 21; 264:1433-1434.
    View in: PubMed
    Score: 0.215
  17. Boguslav M, Cohen KB, Baumgartner WA, Hunter LE. Improving precision in concept normalization. Pac Symp Biocomput. 2018; 23:566-577.
    View in: PubMed
    Score: 0.192
  18. Yadav P, Jezek E, Bouillon P, Callahan TJ, Bada M, Hunter LE, Cohen KB. Semantic Relations in Compound Nouns: Perspectives from Inter-Annotator Agreement. Stud Health Technol Inform. 2017; 245:644-648.
    View in: PubMed
    Score: 0.179
  19. Hailu ND, Cohen KB, Hunter LE. Ontology translation: A case study on translating the Gene Ontology from English to German. Nat Lang Process Inf Syst. 2014 Jun; 8455:33-38.
    View in: PubMed
    Score: 0.150
  20. Funk CS, Hunter LE, Cohen KB. Combining heterogenous data for prediction of disease related and pharmacogenes. Pac Symp Biocomput. 2014; 328-39.
    View in: PubMed
    Score: 0.145
  21. Cohen KB, Hunter LE, Palmer M. Assessment of software testing and quality assurance in natural language processing applications and a linguistically inspired approach to improving it. Trust Eternal Syst Via Evol Softw Data Knowl (2012). 2013; 379:77-90.
    View in: PubMed
    Score: 0.136
  22. Verspoor K, Cohen KB, Lanfranchi A, Warner C, Johnson HL, Roeder C, Choi JD, Funk C, Malenkiy Y, Eckert M, Xue N, Baumgartner WA, Bada M, Palmer M, Hunter LE. A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools. BMC Bioinformatics. 2012 Aug 17; 13:207.
    View in: PubMed
    Score: 0.132
  23. Bada M, Eckert M, Evans D, Garcia K, Shipley K, Sitnikov D, Baumgartner WA, Cohen KB, Verspoor K, Blake JA, Hunter LE. Concept annotation in the CRAFT corpus. BMC Bioinformatics. 2012 Jul 09; 13:161.
    View in: PubMed
    Score: 0.131
  24. Verspoor K, Roeder C, Johnson HL, Cohen KB, Baumgartner WA, Hunter LE. Exploring species-based strategies for gene normalization. IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep; 7(3):462-71.
    View in: PubMed
    Score: 0.114
  25. Verspoor K, Dvorkin D, Cohen KB, Hunter L. Ontology quality assurance through analysis of term transformations. Bioinformatics. 2009 Jun 15; 25(12):i77-84.
    View in: PubMed
    Score: 0.106
  26. Verspoor K, Cohen KB, Hunter L. The textual characteristics of traditional and Open Access scientific journals are similar. BMC Bioinformatics. 2009 Jun 15; 10:183.
    View in: PubMed
    Score: 0.106
  27. Baumgartner WA, Lu Z, Johnson HL, Caporaso JG, Paquette J, Lindemann A, White EK, Medvedeva O, Cohen KB, Hunter L. Concept recognition for extracting protein interaction relations from biomedical text. Genome Biol. 2008; 9 Suppl 2:S9.
    View in: PubMed
    Score: 0.100
  28. Baumgartner WA, Cohen KB, Hunter L. An open-source framework for large-scale, flexible evaluation of biomedical text mining systems. J Biomed Discov Collab. 2008 Jan 29; 3:1.
    View in: PubMed
    Score: 0.096
  29. Caporaso JG, Deshpande N, Fink JL, Bourne PE, Cohen KB, Hunter L. Intrinsic evaluation of text mining tools may not predict performance on realistic tasks. Pac Symp Biocomput. 2008; 640-51.
    View in: PubMed
    Score: 0.096
  30. Caporaso JG, Baumgartner WA, Randolph DA, Cohen KB, Hunter L. Rapid pattern development for concept recognition systems: application to point mutations. J Bioinform Comput Biol. 2007 Dec; 5(6):1233-59.
    View in: PubMed
    Score: 0.095
  31. Johnson HL, Baumgartner WA, Krallinger M, Cohen KB, Hunter L. Corpus refactoring: a feasibility study. J Biomed Discov Collab. 2007 Sep 13; 2:4.
    View in: PubMed
    Score: 0.094
  32. Baumgartner WA, Cohen KB, Fox LM, Acquaah-Mensah G, Hunter L. Manual curation is not sufficient for annotation of genomic databases. Bioinformatics. 2007 Jul 01; 23(13):i41-8.
    View in: PubMed
    Score: 0.093
  33. Caporaso JG, Baumgartner WA, Randolph DA, Cohen KB, Hunter L. MutationFinder: a high-performance system for extracting point mutation mentions from text. Bioinformatics. 2007 Jul 15; 23(14):1862-5.
    View in: PubMed
    Score: 0.092
  34. Johnson HL, Cohen KB, Hunter L. A fault model for ontology mapping, alignment, and linking systems. Pac Symp Biocomput. 2007; 233-44.
    View in: PubMed
    Score: 0.090
  35. Lu Z, Cohen KB, Hunter L. GeneRIF quality assurance as summary revision. Pac Symp Biocomput. 2007; 269-80.
    View in: PubMed
    Score: 0.090
  36. Johnson HL, Cohen KB, Baumgartner WA, Lu Z, Bada M, Kester T, Kim H, Hunter L. Evaluation of lexical methods for detecting relationships between concepts from multiple ontologies. Pac Symp Biocomput. 2006; 28-39.
    View in: PubMed
    Score: 0.084
  37. Lu Z, Cohen KB, Hunter L. Finding GeneRIFs via gene ontology annotations. Pac Symp Biocomput. 2006; 52-63.
    View in: PubMed
    Score: 0.084
  38. Kinoshita S, Cohen KB, Ogren PV, Hunter L. BioCreAtIvE task1A: entity identification with a stochastic tagger. BMC Bioinformatics. 2005; 6 Suppl 1:S4.
    View in: PubMed
    Score: 0.080
  39. Ogren PV, Cohen KB, Hunter L. Implications of compositionality in the gene ontology for its curation and usage. Pac Symp Biocomput. 2005; 174-85.
    View in: PubMed
    Score: 0.078
  40. Pressman PS, Ross ED, Cohen KB, Chen KH, Miller BL, Hunter LE, Gorno-Tempini ML, Levenson RW. Interpersonal prosodic correlation in frontotemporal dementia. Ann Clin Transl Neurol. 2019 07; 6(7):1352-1357.
    View in: PubMed
    Score: 0.053
  41. Funk CS, Cohen KB, Hunter LE, Verspoor KM. Gene Ontology synonym generation rules lead to increased performance in biomedical concept recognition. J Biomed Semantics. 2016 Sep 09; 7:52.
    View in: PubMed
    Score: 0.044
  42. Pattin KA, Greene AC, Altman RB, Cohen KB, Wethington E, Görg C, Hunter LE, Muse SV, Radivojac P, Moore JH. Training the next generation of quantitative biologists in the era of big data. Pac Symp Biocomput. 2015; 488-92.
    View in: PubMed
    Score: 0.039
  43. Funk C, Baumgartner W, Garcia B, Roeder C, Bada M, Cohen KB, Hunter LE, Verspoor K. Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters. BMC Bioinformatics. 2014 Feb 26; 15:59.
    View in: PubMed
    Score: 0.037
  44. Kano Y, Björne J, Ginter F, Salakoski T, Buyko E, Hahn U, Cohen KB, Verspoor K, Roeder C, Hunter LE, Kilicoglu H, Bergler S, Van Landeghem S, Van Parys T, Van de Peer Y, Miwa M, Ananiadou S, Neves M, Pascual-Montano A, Özgür A, Radev DR, Riedel S, Sætre R, Chun HW, Kim JD, Pyysalo S, Ohta T, Tsujii J. U-Compare bio-event meta-service: compatible BioNLP event extraction services. BMC Bioinformatics. 2011 Dec 18; 12:481.
    View in: PubMed
    Score: 0.032
  45. Kano Y, Baumgartner WA, McCrohon L, Ananiadou S, Cohen KB, Hunter L, Tsujii J. U-Compare: share and compare text mining tools with UIMA. Bioinformatics. 2009 Aug 01; 25(15):1997-8.
    View in: PubMed
    Score: 0.026
Connection Strength

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Publication scores are based on many factors, including how long ago they were written and whether the person is a first or senior author.

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