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John Thomson Lovell

TitleAsst Professor Adjunct
InstitutionUniversity of Colorado Boulder
DepartmentEcology & Evolutionary Biology

    Collapse Bibliographic 
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Lovell JT, Grimwood J. The first complete human genome. Nature. 2022 06; 606(7914):468-469. PMID: 35606432.
      View in: PubMed
    2. Carey SB, Lovell JT, Jenkins J, Leebens-Mack J, Schmutz J, Wilson MA, Harkess A. Representing sex chromosomes in genome assemblies. Cell Genom. 2022 May 11; 2(5). PMID: 35720975.
      View in: PubMed
    3. Napier JD, Grabowski PP, Lovell JT, Bonnette J, Mamidi S, Gomez-Hughes MJ, VanWallendael A, Weng X, Handley LH, Kim MK, Boe AR, Fay PA, Fritschi FB, Jastrow JD, Lloyd-Reilley J, Lowry DB, Matamala R, Mitchell RB, Rouquette FM, Wu Y, Webber J, Jones T, Barry K, Grimwood J, Schmutz J, Juenger TE. A generalist-specialist trade-off between switchgrass cytotypes impacts climate adaptation and geographic range. Proc Natl Acad Sci U S A. 2022 04 12; 119(15):e2118879119. PMID: 35377798.
      View in: PubMed
    4. Muchlinski A, Jia M, Tiedge K, Fell JS, Pelot KA, Chew L, Davisson D, Chen Y, Siegel J, Lovell JT, Zerbe P. Cytochrome P450-catalyzed biosynthesis of furanoditerpenoids in the bioenergy crop switchgrass (Panicum virgatum L.). Plant J. 2021 11; 108(4):1053-1068. PMID: 34514645.
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    5. Carey SB, Jenkins J, Lovell JT, Maumus F, Sreedasyam A, Payton AC, Shu S, Tiley GP, Fernandez-Pozo N, Healey A, Barry K, Chen C, Wang M, Lipzen A, Daum C, Saski CA, McBreen JC, Conrad RE, Kollar LM, Olsson S, Huttunen S, Landis JB, Burleigh JG, Wickett NJ, Johnson MG, Rensing SA, Grimwood J, Schmutz J, McDaniel SF. Gene-rich UV sex chromosomes harbor conserved regulators of sexual development. Sci Adv. 2021 06; 7(27). PMID: 34193417.
      View in: PubMed
    6. Choi JY, Abdulkina LR, Yin J, Chastukhina IB, Lovell JT, Agabekian IA, Young PG, Razzaque S, Shippen DE, Juenger TE, Shakirov EV, Purugganan MD. Natural variation in plant telomere length is associated with flowering time. Plant Cell. 2021 05 31; 33(4):1118-1134. PMID: 33580702.
      View in: PubMed
    7. Healey AL, Shepherd M, King GJ, Butler JB, Freeman JS, Lee DJ, Potts BM, Silva-Junior OB, Baten A, Jenkins J, Shu S, Lovell JT, Sreedasyam A, Grimwood J, Furtado A, Grattapaglia D, Barry KW, Hundley H, Simmons BA, Schmutz J, Vaillancourt RE, Henry RJ. Pests, diseases, and aridity have shaped the genome of Corymbia citriodora. Commun Biol. 2021 05 10; 4(1):537. PMID: 33972666.
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    8. Lovell JT, MacQueen AH, Mamidi S, Bonnette J, Jenkins J, Napier JD, Sreedasyam A, Healey A, Session A, Shu S, Barry K, Bonos S, Boston L, Daum C, Deshpande S, Ewing A, Grabowski PP, Haque T, Harrison M, Jiang J, Kudrna D, Lipzen A, Pendergast TH, Plott C, Qi P, Saski CA, Shakirov EV, Sims D, Sharma M, Sharma R, Stewart A, Singan VR, Tang Y, Thibivillier S, Webber J, Weng X, Williams M, Wu GA, Yoshinaga Y, Zane M, Zhang L, Zhang J, Behrman KD, Boe AR, Fay PA, Fritschi FB, Jastrow JD, Lloyd-Reilley J, Martínez-Reyna JM, Matamala R, Mitchell RB, Rouquette FM, Ronald P, Saha M, Tobias CM, Udvardi M, Wing RA, Wu Y, Bartley LE, Casler M, Devos KM, Lowry DB, Rokhsar DS, Grimwood J, Juenger TE, Schmutz J. Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass. Nature. 2021 02; 590(7846):438-444. PMID: 33505029.
      View in: PubMed
    9. Mamidi S, Healey A, Huang P, Grimwood J, Jenkins J, Barry K, Sreedasyam A, Shu S, Lovell JT, Feldman M, Wu J, Yu Y, Chen C, Johnson J, Sakakibara H, Kiba T, Sakurai T, Tavares R, Nusinow DA, Baxter I, Schmutz J, Brutnell TP, Kellogg EA. A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci. Nat Biotechnol. 2020 10; 38(10):1203-1210. PMID: 33020633.
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    10. Bragg J, Tomasi P, Zhang L, Williams T, Wood D, Lovell JT, Healey A, Schmutz J, Bonnette JE, Cheng P, Chanbusarakum L, Juenger T, Tobias CM. Environmentally responsive QTL controlling surface wax load in switchgrass. Theor Appl Genet. 2020 Nov; 133(11):3119-3137. PMID: 32803378.
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    11. Abdulkina LR, Kobayashi C, Lovell JT, Chastukhina IB, Aklilu BB, Agabekian IA, Suescún AV, Valeeva LR, Nyamsuren C, Aglyamova GV, Sharipova MR, Shippen DE, Juenger TE, Shakirov EV. Components of the ribosome biogenesis pathway underlie establishment of telomere length set point in Arabidopsis. Nat Commun. 2019 12 02; 10(1):5479. PMID: 31792215.
      View in: PubMed
    12. Muchlinski A, Chen X, Lovell JT, Köllner TG, Pelot KA, Zerbe P, Ruggiero M, Callaway L, Laliberte S, Chen F, Tholl D. Biosynthesis and Emission of Stress-Induced Volatile Terpenes in Roots and Leaves of Switchgrass (Panicum virgatum L.). Front Plant Sci. 2019; 10:1144. PMID: 31608090.
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    13. Wang B, Mojica JP, Perera N, Lee CR, Lovell JT, Sharma A, Adam C, Lipzen A, Barry K, Rokhsar DS, Schmutz J, Mitchell-Olds T. Correction to: Ancient polymorphisms contribute to genome-wide variation by long-term balancing selection and divergent sorting in Boechera stricta. Genome Biol. 2019 08 09; 20(1):161. PMID: 31399118.
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    14. Wang B, Mojica JP, Perera N, Lee CR, Lovell JT, Sharma A, Adam C, Lipzen A, Barry K, Rokhsar DS, Schmutz J, Mitchell-Olds T. Ancient polymorphisms contribute to genome-wide variation by long-term balancing selection and divergent sorting in Boechera stricta. Genome Biol. 2019 06 21; 20(1):126. PMID: 31227026.
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    15. Lowry DB, Lovell JT, Zhang L, Bonnette J, Fay PA, Mitchell RB, Lloyd-Reilley J, Boe AR, Wu Y, Rouquette FM, Wynia RL, Weng X, Behrman KD, Healey A, Barry K, Lipzen A, Bauer D, Sharma A, Jenkins J, Schmutz J, Fritschi FB, Juenger TE. QTL × environment interactions underlie adaptive divergence in switchgrass across a large latitudinal gradient. Proc Natl Acad Sci U S A. 2019 06 25; 116(26):12933-12941. PMID: 31182579.
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    16. Khasanova A, Lovell JT, Bonnette J, Weng X, Jenkins J, Yoshinaga Y, Schmutz J, Juenger TE. The Genetic Architecture of Shoot and Root Trait Divergence Between Mesic and Xeric Ecotypes of a Perennial Grass. Front Plant Sci. 2019; 10:366. PMID: 31019518.
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    17. Weng X, Lovell JT, Schwartz SL, Cheng C, Haque T, Zhang L, Razzaque S, Juenger TE. Complex interactions between day length and diurnal patterns of gene expression drive photoperiodic responses in a perennial C4 grass. Plant Cell Environ. 2019 07; 42(7):2165-2182. PMID: 30847928.
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    18. Lovell JT, Jenkins J, Lowry DB, Mamidi S, Sreedasyam A, Weng X, Barry K, Bonnette J, Campitelli B, Daum C, Gordon SP, Gould BA, Khasanova A, Lipzen A, MacQueen A, Palacio-Mejía JD, Plott C, Shakirov EV, Shu S, Yoshinaga Y, Zane M, Kudrna D, Talag JD, Rokhsar D, Grimwood J, Schmutz J, Juenger TE. The genomic landscape of molecular responses to natural drought stress in Panicum hallii. Nat Commun. 2018 12 06; 9(1):5213. PMID: 30523281.
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    19. Monroe JG, Powell T, Price N, Mullen JL, Howard A, Evans K, Lovell JT, McKay JK. Drought adaptation in Arabidopsis thaliana by extensive genetic loss-of-function. Elife. 2018 12 06; 7. PMID: 30520727.
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    20. Rulifson G, Bielefeldt AR. Evolution of Students' Varied Conceptualizations About Socially Responsible Engineering: A Four Year Longitudinal Study. Sci Eng Ethics. 2019 06; 25(3):939-974. PMID: 27593459.
      View in: PubMed
    21. Rulifson G, Bielefeldt AR. Evolution of Students' Varied Conceptualizations About Socially Responsible Engineering: A Four Year Longitudinal Study. Sci Eng Ethics. 2019 06; 25(3):939-974. PMID: 23698015.
      View in: PubMed
    22. Rulifson G, Bielefeldt AR. Evolution of Students' Varied Conceptualizations About Socially Responsible Engineering: A Four Year Longitudinal Study. Sci Eng Ethics. 2019 06; 25(3):939-974. PMID: 23783772.
      View in: PubMed
    23. Rulifson G, Bielefeldt AR. Evolution of Students' Varied Conceptualizations About Socially Responsible Engineering: A Four Year Longitudinal Study. Sci Eng Ethics. 2019 06; 25(3):939-974. PMID: 29253197.
      View in: PubMed
    24. Rulifson G, Bielefeldt AR. Evolution of Students' Varied Conceptualizations About Socially Responsible Engineering: A Four Year Longitudinal Study. Sci Eng Ethics. 2019 06; 25(3):939-974. PMID: 25902513.
      View in: PubMed
    25. Rulifson G, Bielefeldt AR. Evolution of Students' Varied Conceptualizations About Socially Responsible Engineering: A Four Year Longitudinal Study. Sci Eng Ethics. 2019 06; 25(3):939-974. PMID: 29434668.
      View in: PubMed
    26. Rulifson G, Bielefeldt AR. Evolution of Students' Varied Conceptualizations About Socially Responsible Engineering: A Four Year Longitudinal Study. Sci Eng Ethics. 2019 06; 25(3):939-974. PMID: 26953271.
      View in: PubMed
    27. Rulifson G, Bielefeldt AR. Evolution of Students' Varied Conceptualizations About Socially Responsible Engineering: A Four Year Longitudinal Study. Sci Eng Ethics. 2019 06; 25(3):939-974. PMID: 26640674.
      View in: PubMed
    28. Rulifson G, Bielefeldt AR. Evolution of Students' Varied Conceptualizations About Socially Responsible Engineering: A Four Year Longitudinal Study. Sci Eng Ethics. 2019 06; 25(3):939-974. PMID: 32313247.
      View in: PubMed
    29. Rulifson G, Bielefeldt AR. Evolution of Students' Varied Conceptualizations About Socially Responsible Engineering: A Four Year Longitudinal Study. Sci Eng Ethics. 2019 06; 25(3):939-974. PMID: 34106529.
      View in: PubMed
    30. Rulifson G, Bielefeldt AR. Evolution of Students' Varied Conceptualizations About Socially Responsible Engineering: A Four Year Longitudinal Study. Sci Eng Ethics. 2019 06; 25(3):939-974. PMID: 34226565.
      View in: PubMed
    31. Monroe JG, Allen ZA, Tanger P, Mullen JL, Lovell JT, Moyers BT, Whitley D, McKay JK. TSPmap, a tool making use of traveling salesperson problem solvers in the efficient and accurate construction of high-density genetic linkage maps. BioData Min. 2017; 10:38. PMID: 29270228.
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    32. Tanger P, Klassen S, Mojica JP, Lovell JT, Moyers BT, Baraoidan M, Naredo ME, McNally KL, Poland J, Bush DR, Leung H, Leach JE, McKay JK. Field-based high throughput phenotyping rapidly identifies genomic regions controlling yield components in rice. Sci Rep. 2017 02 21; 7:42839. PMID: 28220807.
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    33. Lovell JT, Williamson RJ, Wright SI, McKay JK, Sharbel TF. Mutation Accumulation in an Asexual Relative of Arabidopsis. PLoS Genet. 2017 01; 13(1):e1006550. PMID: 28068346.
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    34. Lovell JT, Shakirov EV, Schwartz S, Lowry DB, Aspinwall MJ, Taylor SH, Bonnette J, Palacio-Mejia JD, Hawkes CV, Fay PA, Juenger TE. Promises and Challenges of Eco-Physiological Genomics in the Field: Tests of Drought Responses in Switchgrass. Plant Physiol. 2016 10; 172(2):734-748. PMID: 27246097.
      View in: PubMed
    35. Lovell JT, Mullen JL, Lowry DB, Awole K, Richards JH, Sen S, Verslues PE, Juenger TE, McKay JK. Exploiting Differential Gene Expression and Epistasis to Discover Candidate Genes for Drought-Associated QTLs in Arabidopsis thaliana. Plant Cell. 2015 Apr; 27(4):969-83. PMID: 25873386.
      View in: PubMed
    36. Lovell JT, Grogan K, Sharbel TF, McKay JK. Mating system and environmental variation drive patterns of adaptation in Boechera spatifolia (Brassicaceae). Mol Ecol. 2014 09; 23(18):4486-97. PMID: 25112786.
      View in: PubMed
    37. Ågrena J, Oakley CG, McKay JK, Lovell JT, Schemske DW. Genetic mapping of adaptation reveals fitness tradeoffs in Arabidopsis thaliana. Proc Natl Acad Sci U S A. 2013 Dec 24; 110(52):21077-82. PMID: 24324156.
      View in: PubMed
    38. Lovell JT. Boechera Summit 2011. Mol Ecol. 2011 Dec; 20(23):4840-2. PMID: 22059516.
      View in: PubMed
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