Colorado PROFILES, The Colorado Clinical and Translational Sciences Institute (CCTSI)
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David A Baker

TitleAsst Professor
InstitutionUniversity of Colorado Denver - Anschutz Medical Campus
DepartmentSOM-Rehabilitation Medicine
Phone720/777-5474

    Collapse Research 
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    F32DA006074     (BAKER, DAVID A)Nov 15, 2000
    NIH/NIDA
    COCAINE INDUCED ALTERATIONS GLUTAMATE NEUROTRANSMISSION
    Role: Principal Investigator

    R21MH071672     (BAKER, DAVID A)Jul 15, 2004 - Dec 31, 2006
    NIH/NIMH
    Cystine-Glu Antiporter &PCP Model of Schizophrenia
    Role: Principal Investigator

    R01DA017328     (BAKER, DAVID A)Jul 15, 2004 - Jun 30, 2010
    NIH/NIDA
    Cystine-Glutamate Antiporters and Cocaine Reinstatement
    Role: Principal Investigator

    R43MH083417     (POLLOCK, STEVEN R)Sep 24, 2008 - Jun 30, 2011
    NIH/NIMH
    Development of Compounds Targeting xc- for the Treatment of Schizophrenia
    Role: Co-Principal Investigator

    R44MH083417     (BEYER, CHAD EDWARD)Sep 24, 2008 - Jun 30, 2015
    NIH/NIMH
    Targeting System Xc- for the Treatment of Schizophrenia
    Role: Co-Principal Investigator

    R01DA025617     (BAKER, DAVID A)Aug 1, 2009 - Jul 31, 2012
    NIH/NIDA
    Targeting System Xc- for the Treatment of Addiction
    Role: Principal Investigator

    R21DA035088     (BAKER, DAVID A)Feb 1, 2013 - Jan 31, 2015
    NIH/NIDA
    Role of System xc- in Addiction: Developing &Phenotyping a Slc7a11 knockout rat
    Role: Principal Investigator

    R01DA032895     (GASSER, PAUL JOSEPH)Sep 15, 2014 - May 31, 2019
    NIH/NIDA
    Glucocorticoid regulation of dopamine clearance, cocaine seeking, and reward
    Role: Co-Principal Investigator

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Boyken SE, Benhaim MA, Busch F, Jia M, Bick MJ, Choi H, Klima JC, Chen Z, Walkey C, Mileant A, Sahasrabuddhe A, Wei KY, Hodge EA, Byron S, Quijano-Rubio A, Sankaran B, King NP, Lippincott-Schwartz J, Wysocki VH, Lee KK, Baker D. De novo design of tunable, pH-driven conformational changes. Science. 2019 05 17; 364(6441):658-664. PMID: 31097662.
      View in: PubMed
    2. Patel A, Perrin AJ, Flynn HR, Bisson C, Withers-Martinez C, Treeck M, Flueck C, Nicastro G, Martin SR, Ramos A, Gilberger TW, Snijders AP, Blackman MJ, Baker DA. Cyclic AMP signalling controls key components of malaria parasite host cell invasion machinery. PLoS Biol. 2019 May; 17(5):e3000264. PMID: 31075098.
      View in: PubMed
    3. Penzo M, de Las Heras-Dueña L, Mata-Cantero L, Diaz-Hernandez B, Vazquez-Muñiz MJ, Ghidelli-Disse S, Drewes G, Fernandez-Alvaro E, Baker DA. High-throughput screening of the Plasmodium falciparum cGMP-dependent protein kinase identified a thiazole scaffold which kills erythrocytic and sexual stage parasites. Sci Rep. 2019 May 07; 9(1):7005. PMID: 31065005.
      View in: PubMed
    4. Basak S, Nobrega RP, Tavella D, Deveau LM, Koga N, Tatsumi-Koga R, Baker D, Massi F, Matthews CR. Networks of electrostatic and hydrophobic interactions modulate the complex folding free energy surface of a designed ßa protein. Proc Natl Acad Sci U S A. 2019 04 02; 116(14):6806-6811. PMID: 30877249.
      View in: PubMed
    5. Flueck C, Drought LG, Jones A, Patel A, Perrin AJ, Walker EM, Nofal SD, Snijders AP, Blackman MJ, Baker DA. Phosphodiesterase beta is the master regulator of cAMP signalling during malaria parasite invasion. PLoS Biol. 2019 Feb; 17(2):e3000154. PMID: 30794532.
      View in: PubMed
    6. Silva DA, Yu S, Ulge UY, Spangler JB, Jude KM, Labão-Almeida C, Ali LR, Quijano-Rubio A, Ruterbusch M, Leung I, Biary T, Crowley SJ, Marcos E, Walkey CD, Weitzner BD, Pardo-Avila F, Castellanos J, Carter L, Stewart L, Riddell SR, Pepper M, Bernardes GJL, Dougan M, Garcia KC, Baker D. De novo design of potent and selective mimics of IL-2 and IL-15. Nature. 2019 01; 565(7738):186-191. PMID: 30626941.
      View in: PubMed
    7. Garry DJ, Baker DA, Persad MD, Peresleni T, Kocis C, Demishev M. Progesterone effects on vaginal cytokines in women with a history of preterm birth. PLoS One. 2018; 13(12):e0209346. PMID: 30596707.
      View in: PubMed
    8. Chen Z, Boyken SE, Jia M, Busch F, Flores-Solis D, Bick MJ, Lu P, VanAernum ZL, Sahasrabuddhe A, Langan RA, Bermeo S, Brunette TJ, Mulligan VK, Carter LP, DiMaio F, Sgourakis NG, Wysocki VH, Baker D. Programmable design of orthogonal protein heterodimers. Nature. 2019 01; 565(7737):106-111. PMID: 30568301.
      View in: PubMed
    9. Baker DA, Caswell HL, Eccles FJR. Self-compassion and depression, anxiety, and resilience in adults with epilepsy. Epilepsy Behav. 2019 01; 90:154-161. PMID: 30557784.
      View in: PubMed
    10. Buechler C, Semler M, Baker DA, Newman C, Cornish JP, Chavez D, Guerra B, Lanford R, Brasky K, Kuhn JH, Johnson RF, O'Connor DH, Bailey AL. Subclinical Infection of Macaques and Baboons with A Baboon Simarterivirus. Viruses. 2018 12 10; 10(12). PMID: 30544677.
      View in: PubMed
    11. Romero Romero ML, Yang F, Lin YR, Toth-Petroczy A, Berezovsky IN, Goncearenco A, Yang W, Wellner A, Kumar-Deshmukh F, Sharon M, Baker D, Varani G, Tawfik DS. Simple yet functional phosphate-loop proteins. Proc Natl Acad Sci U S A. 2018 12 18; 115(51):E11943-E11950. PMID: 30504143.
      View in: PubMed
    12. Prunier C, Baker D, Ten Dijke P, Ritsma L. TGF-ß Family Signaling Pathways in Cellular Dormancy. Trends Cancer. 2019 Jan; 5(1):66-78. PMID: 30616757.
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    13. Heffron AS, Mohr EL, Baker D, Haj AK, Buechler CR, Bailey A, Dudley DM, Newman CM, Mohns MS, Koenig M, Breitbach ME, Rasheed M, Stewart LM, Eickhoff J, Pinapati RS, Beckman E, Li H, Patel J, Tan JC, O'Connor DH. Antibody responses to Zika virus proteins in pregnant and non-pregnant macaques. PLoS Negl Trop Dis. 2018 11; 12(11):e0006903. PMID: 30481182.
      View in: PubMed
    14. Large JM, Birchall K, Bouloc NS, Merritt AT, Smiljanic-Hurley E, Tsagris DJ, Wheldon MC, Ansell KH, Coombs PJ, Kettleborough CA, Whalley D, Stewart LB, Bowyer PW, Baker DA, Osborne SA. Potent inhibitors of malarial P. Falciparum protein kinase G: Improving the cell activity of a series of imidazopyridines. Bioorg Med Chem Lett. 2019 Feb 01; 29(3):509-514. PMID: 30553738.
      View in: PubMed
    15. Shen H, Fallas JA, Lynch E, Sheffler W, Parry B, Jannetty N, Decarreau J, Wagenbach M, Vicente JJ, Chen J, Wang L, Dowling Q, Oberdorfer G, Stewart L, Wordeman L, De Yoreo J, Jacobs-Wagner C, Kollman J, Baker D. De novo design of self-assembling helical protein filaments. Science. 2018 11 09; 362(6415):705-709. PMID: 30409885.
      View in: PubMed
    16. Mao Z, Álvarez-González C, Allen-Philbey K, De Trane S, Yildiz O, Campion T, Adams A, Turner BP, Marta M, Gnanapavan S, Espasandin M, Mathews J, Giovannoni G, Baker D, Schmierer K. Treating the ineligible: Disease modification in people with multiple sclerosis beyond NHS England commissioning policies. Mult Scler Relat Disord. 2019 Jan; 27:247-253. PMID: 30419510.
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    17. Vranjkovic O, Van Newenhizen EC, Nordness ME, Blacktop JM, Urbanik LA, Mathy JC, McReynolds JR, Miller AM, Doncheck EM, Kloehn TM, Stinnett GS, Gerndt CH, Ketchesin KD, Baker DA, Seasholtz AF, Mantsch JR. Enhanced CRFR1-Dependent Regulation of a Ventral Tegmental Area to Prelimbic Cortex Projection Establishes Susceptibility to Stress-Induced Cocaine Seeking. J Neurosci. 2018 Dec 12; 38(50):10657-10671. PMID: 30355627.
      View in: PubMed
    18. Benavente ED, Oresegun DR, de Sessions PF, Walker EM, Roper C, Dombrowski JG, de Souza RM, Marinho CRF, Sutherland CJ, Hibberd ML, Mohareb F, Baker DA, Clark TG, Campino S. Global genetic diversity of var2csa in Plasmodium falciparum with implications for malaria in pregnancy and vaccine development. Sci Rep. 2018 Oct 18; 8(1):15429. PMID: 30337594.
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    19. Fang H, Gomes AR, Klages N, Pino P, Maco B, Walker EM, Zenonos ZA, Angrisano F, Baum J, Doerig C, Baker DA, Billker O, Brochet M. Epistasis studies reveal redundancy among calcium-dependent protein kinases in motility and invasion of malaria parasites. Nat Commun. 2018 10 12; 9(1):4248. PMID: 30315162.
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    20. Jester BW, Tinberg CE, Rich MS, Baker D, Fields S. Engineered Biosensors from Dimeric Ligand-Binding Domains. ACS Synth Biol. 2018 Oct 19; 7(10):2457-2467. PMID: 30204430.
      View in: PubMed
    21. Dou J, Vorobieva AA, Sheffler W, Doyle LA, Park H, Bick MJ, Mao B, Foight GW, Lee MY, Gagnon LA, Carter L, Sankaran B, Ovchinnikov S, Marcos E, Huang PS, Vaughan JC, Stoddard BL, Baker D. De novo design of a fluorescence-activating ß-barrel. Nature. 2018 09; 561(7724):485-491. PMID: 30209393.
      View in: PubMed
    22. Buchko GW, Pulavarti SVSRK, Ovchinnikov V, Shaw EA, Rettie SA, Myler PJ, Karplus M, Szyperski T, Baker D, Bahl CD. Cytosolic expression, solution structures, and molecular dynamics simulation of genetically encodable disulfide-rich de novo designed peptides. Protein Sci. 2018 09; 27(9):1611-1623. PMID: 30152054.
      View in: PubMed
    23. Tsagris DJ, Birchall K, Bouloc N, Large JM, Merritt A, Smiljanic-Hurley E, Wheldon M, Ansell KH, Kettleborough C, Whalley D, Stewart LB, Bowyer PW, Baker DA, Osborne SA. Trisubstituted thiazoles as potent and selective inhibitors of Plasmodium falciparum protein kinase G (PfPKG). Bioorg Med Chem Lett. 2018 10 15; 28(19):3168-3173. PMID: 30174152.
      View in: PubMed
    24. Man S, Sanchez Duffhues G, Ten Dijke P, Baker D. The therapeutic potential of targeting the endothelial-to-mesenchymal transition. Angiogenesis. 2019 Feb; 22(1):3-13. PMID: 30076548.
      View in: PubMed
    25. Pryce G, Baker D. Oligoclonal bands in multiple sclerosis; Functional significance and therapeutic implications. Does the specificity matter? Mult Scler Relat Disord. 2018 Oct; 25:131-137. PMID: 30071507.
      View in: PubMed
    26. van Staalduinen J, Baker D, Ten Dijke P, van Dam H. Epithelial-mesenchymal-transition-inducing transcription factors: new targets for tackling chemoresistance in cancer? Oncogene. 2018 Jul 12. PMID: 30002444.
      View in: PubMed
    27. Perrin AJ, Collins CR, Russell MRG, Collinson LM, Baker DA, Blackman MJ. The Actinomyosin Motor Drives Malaria Parasite Red Blood Cell Invasion but Not Egress. MBio. 2018 07 03; 9(4). PMID: 29970464.
      View in: PubMed
    28. Baker D, Eccles FJR, Caswell HL. Correlates of stigma in adults with epilepsy: A systematic review of quantitative studies. Epilepsy Behav. 2018 06; 83:67-80. PMID: 29660506.
      View in: PubMed
    29. Crook ZR, Sevilla GP, Friend D, Brusniak MY, Bandaranayake AD, Clarke M, Gewe M, Mhyre AJ, Baker D, Strong RK, Bradley P, Olson JM. Publisher Correction: Mammalian display screening of diverse cystine-dense peptides for difficult to drug targets. Nat Commun. 2018 03 09; 9(1):1072. PMID: 29523778.
      View in: PubMed
    30. Lu P, Min D, DiMaio F, Wei KY, Vahey MD, Boyken SE, Chen Z, Fallas JA, Ueda G, Sheffler W, Mulligan VK, Xu W, Bowie JU, Baker D. Accurate computational design of multipass transmembrane proteins. Science. 2018 03 02; 359(6379):1042-1046. PMID: 29496880.
      View in: PubMed
    31. Murphy AC, Muldoon SF, Baker D, Lastowka A, Bennett B, Yang M, Bassett DS. Structure, function, and control of the human musculoskeletal network. PLoS Biol. 2018 01; 16(1):e2002811. PMID: 29346370.
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    32. Meerstein-Kessel L, van der Lee R, Stone W, Lanke K, Baker DA, Alano P, Silvestrini F, Janse CJ, Khan SM, van de Vegte-Bolmer M, Graumans W, Siebelink-Stoter R, Kooij TWA, Marti M, Drakeley C, Campo JJ, van Dam TJP, Sauerwein R, Bousema T, Huynen MA. Probabilistic data integration identifies reliable gametocyte-specific proteins and transcripts in malaria parasites. Sci Rep. 2018 01 11; 8(1):410. PMID: 29323249.
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    33. Crook ZR, Sevilla GP, Friend D, Brusniak MY, Bandaranayake AD, Clarke M, Gewe M, Mhyre AJ, Baker D, Strong RK, Bradley P, Olson JM. Mammalian display screening of diverse cystine-dense peptides for difficult to drug targets. Nat Commun. 2017 12 21; 8(1):2244. PMID: 29269835.
      View in: PubMed
    34. Hosseinzadeh P, Bhardwaj G, Mulligan VK, Shortridge MD, Craven TW, Pardo-Avila F, Rettie SA, Kim DE, Silva DA, Ibrahim YM, Webb IK, Cort JR, Adkins JN, Varani G, Baker D. Comprehensive computational design of ordered peptide macrocycles. Science. 2017 12 15; 358(6369):1461-1466. PMID: 29242347.
      View in: PubMed
    35. Butterfield GL, Lajoie MJ, Gustafson HH, Sellers DL, Nattermann U, Ellis D, Bale JB, Ke S, Lenz GH, Yehdego A, Ravichandran R, Pun SH, King NP, Baker D. Evolution of a designed protein assembly encapsulating its own RNA genome. Nature. 2017 12 21; 552(7685):415-420. PMID: 29236688.
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    36. Nordenfelt P, Moore TI, Mehta SB, Kalappurakkal JM, Swaminathan V, Koga N, Lambert TJ, Baker D, Waters JC, Oldenbourg R, Tani T, Mayor S, Waterman CM, Springer TA. Direction of actin flow dictates integrin LFA-1 orientation during leukocyte migration. Nat Commun. 2017 12 11; 8(1):2047. PMID: 29229906.
      View in: PubMed
    37. Baker DA, Drought LG, Flueck C, Nofal SD, Patel A, Penzo M, Walker EM. Cyclic nucleotide signalling in malaria parasites. Open Biol. 2017 12; 7(12). PMID: 29263246.
      View in: PubMed
    38. Forghany Z, Robertson F, Lundby A, Olsen JV, Baker DA. Control of endothelial cell tube formation by Notch ligand intracellular domain interactions with activator protein 1 (AP-1). J Biol Chem. 2018 01 26; 293(4):1229-1242. PMID: 29196606.
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    39. van IJzendoorn DGP, Forghany Z, Liebelt F, Vertegaal AC, Jochemsen AG, Bovée JVMG, Szuhai K, Baker DA. Functional analyses of a human vascular tumor FOS variant identify a novel degradation mechanism and a link to tumorigenesis. J Biol Chem. 2017 12 29; 292(52):21282-21290. PMID: 29150442.
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    40. Wheeler DS, Ebben AL, Kurtoglu B, Lovell ME, Bohn AT, Jasek IA, Baker DA, Mantsch JR, Gasser PJ, Wheeler RA. Corticosterone regulates both naturally occurring and cocaine-induced dopamine signaling by selectively decreasing dopamine uptake. Eur J Neurosci. 2017 Nov; 46(10):2638-2646. PMID: 28965353.
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    41. Alvis BD, King AB, Pandharipande PP, Weavind LM, Avila K, Leisy PJ, Ajmal M, McHugh M, Keegan KA, Baker DA, Walia A, Hughes CG. Creation and Execution of a Novel Anesthesia Perioperative Care Service at a Veterans Affairs Hospital. Anesth Analg. 2017 11; 125(5):1526-1531. PMID: 28632542.
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    42. Lin YR, Koga N, Vorobiev SM, Baker D. Cyclic oligomer design with de novo aß-proteins. Protein Sci. 2017 Nov; 26(11):2187-2194. PMID: 28801928.
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    43. Sussman ZW, Peterson RL, Connery AK, Baker DA, Kirkwood MW. Utility of matrix reasoning as an embedded performance validity indicator in pediatric mild traumatic brain injury. Appl Neuropsychol Child. 2019 Jan-Mar; 8(1):70-75. PMID: 29058467.
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    44. Maiga AW, Deppen SA, Pinkerman R, Callaway-Lane C, Massion PP, Dittus RS, Lambright ES, Nesbitt JC, Baker D, Grogan EL. Timeliness of Care and Lung Cancer Tumor-Stage Progression: How Long Can We Wait? Ann Thorac Surg. 2017 Dec; 104(6):1791-1797. PMID: 29033012.
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    45. McReynolds JR, Doncheck EM, Li Y, Vranjkovic O, Graf EN, Ogasawara D, Cravatt BF, Baker DA, Liu QS, Hillard CJ, Mantsch JR. Stress Promotes Drug Seeking Through Glucocorticoid-Dependent Endocannabinoid Mobilization in the Prelimbic Cortex. Biol Psychiatry. 2018 Jul 15; 84(2):85-94. PMID: 29100630.
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    46. Swaminathan V, Kalappurakkal JM, Mehta SB, Nordenfelt P, Moore TI, Koga N, Baker DA, Oldenbourg R, Tani T, Mayor S, Springer TA, Waterman CM. Actin retrograde flow actively aligns and orients ligand-engaged integrins in focal adhesions. Proc Natl Acad Sci U S A. 2017 10 03; 114(40):10648-10653. PMID: 29073038.
      View in: PubMed
    47. Chevalier A, Silva DA, Rocklin GJ, Hicks DR, Vergara R, Murapa P, Bernard SM, Zhang L, Lam KH, Yao G, Bahl CD, Miyashita SI, Goreshnik I, Fuller JT, Koday MT, Jenkins CM, Colvin T, Carter L, Bohn A, Bryan CM, Fernández-Velasco DA, Stewart L, Dong M, Huang X, Jin R, Wilson IA, Fuller DH, Baker D. Massively parallel de novo protein design for targeted therapeutics. Nature. 2017 10 05; 550(7674):74-79. PMID: 28953867.
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    48. Pryce G, Baker D. Antidote to cannabinoid intoxication: the CB1 receptor inverse agonist, AM251, reverses hypothermic effects of the CB1 receptor agonist, CB-13, in mice. Br J Pharmacol. 2017 Nov; 174(21):3790-3794. PMID: 28800377.
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    49. Baker DA, Stewart LB, Large JM, Bowyer PW, Ansell KH, Jiménez-Díaz MB, El Bakkouri M, Birchall K, Dechering KJ, Bouloc NS, Coombs PJ, Whalley D, Harding DJ, Smiljanic-Hurley E, Wheldon MC, Walker EM, Dessens JT, Lafuente MJ, Sanz LM, Gamo FJ, Ferrer SB, Hui R, Bousema T, Angulo-Barturén I, Merritt AT, Croft SL, Gutteridge WE, Kettleborough CA, Osborne SA. A potent series targeting the malarial cGMP-dependent protein kinase clears infection and blocks transmission. Nat Commun. 2017 09 05; 8(1):430. PMID: 28874661.
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    50. Dubuisson N, Bauer A, Buckley M, Gilbert R, Paterson A, Marta M, Gnanapavan S, Turner B, Baker D, Giovannoni G, Schmierer K, Thomson A. Validation of an environmentally-friendly and affordable cardboard 9-hole peg test. Mult Scler Relat Disord. 2017 Oct; 17:172-176. PMID: 29055452.
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    51. Rocklin GJ, Chidyausiku TM, Goreshnik I, Ford A, Houliston S, Lemak A, Carter L, Ravichandran R, Mulligan VK, Chevalier A, Arrowsmith CH, Baker D. Global analysis of protein folding using massively parallel design, synthesis, and testing. Science. 2017 07 14; 357(6347):168-175. PMID: 28706065.
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    52. Baker D, Pryce G, Visintin C, Sisay S, Bondarenko AI, Vanessa Ho WS, Jackson SJ, Williams TE, Al-Izki S, Sevastou I, Okuyama M, Graier WF, Stevenson LA, Tanner C, Ross R, Pertwee RG, Henstridge CM, Irving AJ, Schulman J, Powell K, Baker MD, Giovannoni G, Selwood DL. Big conductance calcium-activated potassium channel openers control spasticity without sedation. Br J Pharmacol. 2017 Aug; 174(16):2662-2681. PMID: 28677901.
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    53. Schoebel S, Mi W, Stein A, Ovchinnikov S, Pavlovicz R, DiMaio F, Baker D, Chambers MG, Su H, Li D, Rapoport TA, Liao M. Cryo-EM structure of the protein-conducting ERAD channel Hrd1 in complex with Hrd3. Nature. 2017 08 17; 548(7667):352-355. PMID: 28682307.
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    54. Janda CY, Dang LT, You C, Chang J, de Lau W, Zhong ZA, Yan KS, Marecic O, Siepe D, Li X, Moody JD, Williams BO, Clevers H, Piehler J, Baker D, Kuo CJ, Garcia KC. Surrogate Wnt agonists that phenocopy canonical Wnt and ß-catenin signalling. Nature. 2017 05 11; 545(7653):234-237. PMID: 28467818.
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    55. Ganter M, Goldberg JM, Dvorin JD, Paulo JA, King JG, Tripathi AK, Paul AS, Yang J, Coppens I, Jiang RH, Elsworth B, Baker DA, Dinglasan RR, Gygi SP, Duraisingh MT. Erratum: Plasmodium falciparum CRK4 directs continuous rounds of DNA replication during schizogony. Nat Microbiol. 2017 Mar 06; 2:17038. PMID: 28263306.
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    56. Ganter M, Goldberg JM, Dvorin JD, Paulo JA, King JG, Tripathi AK, Paul AS, Yang J, Coppens I, Jiang RH, Elsworth B, Baker DA, Dinglasan RR, Gygi SP, Duraisingh MT. Plasmodium falciparum CRK4 directs continuous rounds of DNA replication during schizogony. Nat Microbiol. 2017 Feb 17; 2:17017. PMID: 28211852.
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    57. Ovchinnikov S, Park H, Varghese N, Huang PS, Pavlopoulos GA, Kim DE, Kamisetty H, Kyrpides NC, Baker D. Protein structure determination using metagenome sequence data. Science. 2017 Jan 20; 355(6322):294-298. PMID: 28104891.
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    58. Marcos E, Basanta B, Chidyausiku TM, Tang Y, Oberdorfer G, Liu G, Swapna GV, Guan R, Silva DA, Dou J, Pereira JH, Xiao R, Sankaran B, Zwart PH, Montelione GT, Baker D. Principles for designing proteins with cavities formed by curved ß sheets. Science. 2017 01 13; 355(6321):201-206. PMID: 28082595.
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    59. Mills JH, Sheffler W, Ener ME, Almhjell PJ, Oberdorfer G, Pereira JH, Parmeggiani F, Sankaran B, Zwart PH, Baker D. Computational design of a homotrimeric metalloprotein with a trisbipyridyl core. Proc Natl Acad Sci U S A. 2016 12 27; 113(52):15012-15017. PMID: 27940918.
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    60. Fallas JA, Ueda G, Sheffler W, Nguyen V, McNamara DE, Sankaran B, Pereira JH, Parmeggiani F, Brunette TJ, Cascio D, Yeates TR, Zwart P, Baker D. Computational design of self-assembling cyclic protein homo-oligomers. Nat Chem. 2017 04; 9(4):353-360. PMID: 28338692.
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    61. Baker DA, Algorta GP. The Relationship Between Online Social Networking and Depression: A Systematic Review of Quantitative Studies. Cyberpsychol Behav Soc Netw. 2016 Nov; 19(11):638-648. PMID: 27732062.
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    62. Mattsson N, Zetterberg H, Janelidze S, Insel PS, Andreasson U, Stomrud E, Palmqvist S, Baker D, Tan Hehir CA, Jeromin A, Hanlon D, Song L, Shaw LM, Trojanowski JQ, Weiner MW, Hansson O, Blennow K. Plasma tau in Alzheimer disease. Neurology. 2016 Oct 25; 87(17):1827-1835. PMID: 27694257.
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    63. Chen J, Varga A, Selvarajah S, Jenes A, Dienes B, Sousa-Valente J, Kulik A, Veress G, Brain SD, Baker D, Urban L, Mackie K, Nagy I. Spatial Distribution of the Cannabinoid Type 1 and Capsaicin Receptors May Contribute to the Complexity of Their Crosstalk. Sci Rep. 2016 Sep 22; 6:33307. PMID: 27653550.
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    64. Huang PS, Boyken SE, Baker D. The coming of age of de novo protein design. Nature. 2016 09 15; 537(7620):320-7. PMID: 27629638.
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    65. Bhardwaj G, Mulligan VK, Bahl CD, Gilmore JM, Harvey PJ, Cheneval O, Buchko GW, Pulavarti SV, Kaas Q, Eletsky A, Huang PS, Johnsen WA, Greisen PJ, Rocklin GJ, Song Y, Linsky TW, Watkins A, Rettie SA, Xu X, Carter LP, Bonneau R, Olson JM, Coutsias E, Correnti CE, Szyperski T, Craik DJ, Baker D. Accurate de novo design of hyperstable constrained peptides. Nature. 2016 Oct 20; 538(7625):329-335. PMID: 27626386.
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    66. McReynolds JR, Taylor A, Vranjkovic O, Ambrosius T, Derricks O, Nino B, Kurtoglu B, Wheeler RA, Baker DA, Gasser PJ, Mantsch JR. Corticosterone Potentiation of Cocaine-Induced Reinstatement of Conditioned Place Preference in Mice is Mediated by Blockade of the Organic Cation Transporter 3. Neuropsychopharmacology. 2017 02; 42(3):757-765. PMID: 27604564.
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    67. Hurley MM, Maunze B, Block ME, Frenkel MM, Reilly MJ, Kim E, Chen Y, Li Y, Baker DA, Liu QS, Choi S. Pituitary Adenylate-Cyclase Activating Polypeptide Regulates Hunger- and Palatability-Induced Binge Eating. Front Neurosci. 2016; 10:383. PMID: 27597817.
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    68. Burnham SC, Rowe CC, Baker D, Bush AI, Doecke JD, Faux NG, Laws SM, Martins RN, Maruff P, Macaulay SL, Rainey-Smith S, Savage G, Ames D, Masters CL, Wilson W, Villemagne VL. Predicting Alzheimer disease from a blood-based biomarker profile: A 54-month follow-up. Neurology. 2016 Sep 13; 87(11):1093-101. PMID: 27534714.
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    69. Bale JB, Gonen S, Liu Y, Sheffler W, Ellis D, Thomas C, Cascio D, Yeates TO, Gonen T, King NP, Baker D. Accurate design of megadalton-scale two-component icosahedral protein complexes. Science. 2016 Jul 22; 353(6297):389-94. PMID: 27463675.
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    70. Sevastou I, Pryce G, Baker D, Selwood DL. Characterisation of Transcriptional Changes in the Spinal Cord of the Progressive Experimental Autoimmune Encephalomyelitis Biozzi ABH Mouse Model by RNA Sequencing. PLoS One. 2016; 11(6):e0157754. PMID: 27355629.
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    71. Boyken SE, Chen Z, Groves B, Langan RA, Oberdorfer G, Ford A, Gilmore JM, Xu C, DiMaio F, Pereira JH, Sankaran B, Seelig G, Zwart PH, Baker D. De novo design of protein homo-oligomers with modular hydrogen-bond network-mediated specificity. Science. 2016 May 06; 352(6286):680-7. PMID: 27151862.
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    72. Connery AK, Peterson RL, Baker DA, Kirkwood MW. The impact of pediatric neuropsychological consultation in mild traumatic brain injury: a model for providing feedback after invalid performance. Clin Neuropsychol. 2016 05; 30(4):579-98. PMID: 27142647.
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    73. Campino S, Benavente ED, Assefa S, Thompson E, Drought LG, Taylor CJ, Gorvett Z, Carret CK, Flueck C, Ivens AC, Kwiatkowski DP, Alano P, Baker DA, Clark TG. Genomic variation in two gametocyte non-producing Plasmodium falciparum clonal lines. Malar J. 2016 Apr 21; 15:229. PMID: 27098483.
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    74. Kong L, Albano R, Madayag A, Raddatz N, Mantsch JR, Choi S, Lobner D, Baker DA. Pituitary Adenylate cyclase-activating polypeptide orchestrates neuronal regulation of the astrocytic glutamate-releasing mechanism system xc (.). J Neurochem. 2016 May; 137(3):384-93. PMID: 26851652.
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    75. Ovchinnikov S, Kim DE, Wang RY, Liu Y, DiMaio F, Baker D. Improved de novo structure prediction in CASP11 by incorporating coevolution information into Rosetta. Proteins. 2016 09; 84 Suppl 1:67-75. PMID: 26677056.
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    76. Connery AK, Peterson RL, Baker DA, Randolph C, Kirkwood MW. The Role of Neuropsychological Evaluation in the Clinical Management of Concussion. Phys Med Rehabil Clin N Am. 2016 05; 27(2):475-86. PMID: 27154857.
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    77. Hurley MM, Resch JM, Maunze B, Frenkel MM, Baker DA, Choi S. N-acetylcysteine decreases binge eating in a rodent model. Int J Obes (Lond). 2016 07; 40(7):1183-6. PMID: 26975440.
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    78. Koday MT, Nelson J, Chevalier A, Koday M, Kalinoski H, Stewart L, Carter L, Nieusma T, Lee PS, Ward AB, Wilson IA, Dagley A, Smee DF, Baker D, Fuller DH. A Computationally Designed Hemagglutinin Stem-Binding Protein Provides In Vivo Protection from Influenza Independent of a Host Immune Response. PLoS Pathog. 2016 Feb; 12(2):e1005409. PMID: 26845438.
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    79. Kirkwood MW, Peterson RL, Baker DA, Connery AK. Parent satisfaction with neuropsychological consultation after pediatric mild traumatic brain injury. Child Neuropsychol. 2017 04; 23(3):273-283. PMID: 26739699.
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    80. Green JL, Moon RW, Whalley D, Bowyer PW, Wallace C, Rochani A, Nageshan RK, Howell SA, Grainger M, Jones HM, Ansell KH, Chapman TM, Taylor DL, Osborne SA, Baker DA, Tatu U, Holder AA. Imidazopyridazine Inhibitors of Plasmodium falciparum Calcium-Dependent Protein Kinase 1 Also Target Cyclic GMP-Dependent Protein Kinase and Heat Shock Protein 90 To Kill the Parasite at Different Stages of Intracellular Development. Antimicrob Agents Chemother. 2015 Dec 28; 60(3):1464-75. PMID: 26711771.
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    81. Warne J, Pryce G, Hill JM, Shi X, Lennerås F, Puentes F, Kip M, Hilditch L, Walker P, Simone MI, Chan AW, Towers GJ, Coker AR, Duchen MR, Szabadkai G, Baker D, Selwood DL. Selective Inhibition of the Mitochondrial Permeability Transition Pore Protects against Neurodegeneration in Experimental Multiple Sclerosis. J Biol Chem. 2016 Feb 26; 291(9):4356-73. PMID: 26679998.
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    82. Doyle L, Hallinan J, Bolduc J, Parmeggiani F, Baker D, Stoddard BL, Bradley P. Rational design of a-helical tandem repeat proteins with closed architectures. Nature. 2015 Dec 24; 528(7583):585-8. PMID: 26675735.
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    83. Brunette TJ, Parmeggiani F, Huang PS, Bhabha G, Ekiert DC, Tsutakawa SE, Hura GL, Tainer JA, Baker D. Exploring the repeat protein universe through computational protein design. Nature. 2015 Dec 24; 528(7583):580-4. PMID: 26675729.
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    84. Mak WS, Tran S, Marcheschi R, Bertolani S, Thompson J, Baker D, Liao JC, Siegel JB. Integrative genomic mining for enzyme function to enable engineering of a non-natural biosynthetic pathway. Nat Commun. 2015 Nov 24; 6:10005. PMID: 26598135.
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    85. Huang PS, Feldmeier K, Parmeggiani F, Velasco DAF, Höcker B, Baker D. De novo design of a four-fold symmetric TIM-barrel protein with atomic-level accuracy. Nat Chem Biol. 2016 Jan; 12(1):29-34. PMID: 26595462.
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    86. Blacktop JM, Vranjkovic O, Mayer M, Van Hoof M, Baker DA, Mantsch JR. Antagonism of GABA-B but not GABA-A receptors in the VTA prevents stress- and intra-VTA CRF-induced reinstatement of extinguished cocaine seeking in rats. Neuropharmacology. 2016 Mar; 102:197-206. PMID: 26596556.
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    87. Klein JC, Lajoie MJ, Schwartz JJ, Strauch EM, Nelson J, Baker D, Shendure J. Multiplex pairwise assembly of array-derived DNA oligonucleotides. Nucleic Acids Res. 2016 Mar 18; 44(5):e43. PMID: 26553805.
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    88. Bednar D, Beerens K, Sebestova E, Bendl J, Khare S, Chaloupkova R, Prokop Z, Brezovsky J, Baker D, Damborsky J. FireProt: Energy- and Evolution-Based Computational Design of Thermostable Multiple-Point Mutants. PLoS Comput Biol. 2015 Nov; 11(11):e1004556. PMID: 26529612.
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    89. Kirkwood MW, Peterson RL, Connery AK, Baker DA, Forster J. A Pilot Study Investigating Neuropsychological Consultation as an Intervention for Persistent Postconcussive Symptoms in a Pediatric Sample. J Pediatr. 2016 Feb; 169:244-9.e1. PMID: 26541427.
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    90. McReynolds JR, Doncheck EM, Vranjkovic O, Ganzman GS, Baker DA, Hillard CJ, Mantsch JR. CB1 receptor antagonism blocks stress-potentiated reinstatement of cocaine seeking in rats. Psychopharmacology (Berl). 2016 Jan; 233(1):99-109. PMID: 26455361.
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    91. Pakpoor J, Disanto G, Altmann DR, Pavitt S, Turner BP, Marta M, Juliusson G, Baker D, Chataway J, Schmierer K. No evidence for higher risk of cancer in patients with multiple sclerosis taking cladribine. Neurol Neuroimmunol Neuroinflamm. 2015 Dec; 2(6):e158. PMID: 26468472.
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    92. Wolf C, Siegel JB, Tinberg C, Camarca A, Gianfrani C, Paski S, Guan R, Montelione G, Baker D, Pultz IS. Engineering of Kuma030: A Gliadin Peptidase That Rapidly Degrades Immunogenic Gliadin Peptides in Gastric Conditions. J Am Chem Soc. 2015 Oct 14; 137(40):13106-13. PMID: 26374198.
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    93. Lin YR, Koga N, Tatsumi-Koga R, Liu G, Clouser AF, Montelione GT, Baker D. Control over overall shape and size in de novo designed proteins. Proc Natl Acad Sci U S A. 2015 Oct 06; 112(40):E5478-85. PMID: 26396255.
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    94. Peterson RL, Connery AK, Baker DA, Kirkwood MW. Preinjury Emotional-Behavioral Functioning of Children With Lingering Problems After Mild Traumatic Brain Injury. J Neuropsychiatry Clin Neurosci. 2015; 27(4):280-6. PMID: 26258490.
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    95. Guenot M, Loizon S, Howard J, Costa G, Baker DA, Mohabeer SY, Troye-Blomberg M, Moreau JF, Déchanet-Merville J, Mercereau-Puijalon O, Mamani-Matsuda M, Behr C. Phosphoantigen Burst upon Plasmodium falciparum Schizont Rupture Can Distantly Activate V?9Vd2 T Cells. Infect Immun. 2015 Oct; 83(10):3816-24. PMID: 26169273.
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    96. Alam MM, Solyakov L, Bottrill AR, Flueck C, Siddiqui FA, Singh S, Mistry S, Viskaduraki M, Lee K, Hopp CS, Chitnis CE, Doerig C, Moon RW, Green JL, Holder AA, Baker DA, Tobin AB. Phosphoproteomics reveals malaria parasite Protein Kinase G as a signalling hub regulating egress and invasion. Nat Commun. 2015 Jul 07; 6:7285. PMID: 26149123.
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    97. Gonen S, DiMaio F, Gonen T, Baker D. Design of ordered two-dimensional arrays mediated by noncovalent protein-protein interfaces. Science. 2015 Jun 19; 348(6241):1365-8. PMID: 26089516.
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    98. Mantsch JR, Baker DA, Funk D, Lê AD, Shaham Y. Stress-Induced Reinstatement of Drug Seeking: 20 Years of Progress. Neuropsychopharmacology. 2016 Jan; 41(1):335-56. PMID: 25976297.
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    99. Ramdani G, Naissant B, Thompson E, Breil F, Lorthiois A, Dupuy F, Cummings R, Duffier Y, Corbett Y, Mercereau-Puijalon O, Vernick K, Taramelli D, Baker DA, Langsley G, Lavazec C. cAMP-Signalling Regulates Gametocyte-Infected Erythrocyte Deformability Required for Malaria Parasite Transmission. PLoS Pathog. 2015 May; 11(5):e1004815. PMID: 25951195.
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    100. Park H, DiMaio F, Baker D. The origin of consistent protein structure refinement from structural averaging. Structure. 2015 Jun 02; 23(6):1123-8. PMID: 25960407.
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    101. Albano R, Raddatz NJ, Hjelmhaug J, Baker DA, Lobner D. Regulation of System xc(-) by Pharmacological Manipulation of Cellular Thiols. Oxid Med Cell Longev. 2015; 2015:269371. PMID: 25949770.
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    102. Gidley Larson JC, Flaro L, Peterson RL, Connery AK, Baker DA, Kirkwood MW. The Medical Symptom Validity Test Measures Effort Not Ability in Children: A Comparison Between Mild TBI and Fetal Alcohol Spectrum Disorder Samples. Arch Clin Neuropsychol. 2015 May; 30(3):192-9. PMID: 25787156.
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    103. Siegel JB, Smith AL, Poust S, Wargacki AJ, Bar-Even A, Louw C, Shen BW, Eiben CB, Tran HM, Noor E, Gallaher JL, Bale J, Yoshikuni Y, Gelb MH, Keasling JD, Stoddard BL, Lidstrom ME, Baker D. Computational protein design enables a novel one-carbon assimilation pathway. Proc Natl Acad Sci U S A. 2015 Mar 24; 112(12):3704-9. PMID: 25775555.
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    104. Wang RY, Kudryashev M, Li X, Egelman EH, Basler M, Cheng Y, Baker D, DiMaio F. De novo protein structure determination from near-atomic-resolution cryo-EM maps. Nat Methods. 2015 Apr; 12(4):335-8. PMID: 25707029.
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    105. Pearson AD, Mills JH, Song Y, Nasertorabi F, Han GW, Baker D, Stevens RC, Schultz PG. Transition states. Trapping a transition state in a computationally designed protein bottle. Science. 2015 Feb 20; 347(6224):863-867. PMID: 25700516.
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    106. Henriques G, van Schalkwyk DA, Burrow R, Warhurst DC, Thompson E, Baker DA, Fidock DA, Hallett R, Flueck C, Sutherland CJ. The Mu subunit of Plasmodium falciparum clathrin-associated adaptor protein 2 modulates in vitro parasite response to artemisinin and quinine. Antimicrob Agents Chemother. 2015 May; 59(5):2540-7. PMID: 25691625.
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    107. Kim JJ, Flueck C, Franz E, Sanabria-Figueroa E, Thompson E, Lorenz R, Bertinetti D, Baker DA, Herberg FW, Kim C. Crystal structures of the carboxyl cGMP binding domain of the Plasmodium falciparum cGMP-dependent protein kinase reveal a novel capping triad crucial for merozoite egress. PLoS Pathog. 2015 Feb; 11(2):e1004639. PMID: 25646845.
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    108. Park K, Shen BW, Parmeggiani F, Huang PS, Stoddard BL, Baker D. Control of repeat-protein curvature by computational protein design. Nat Struct Mol Biol. 2015 Feb; 22(2):167-74. PMID: 25580576.
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    109. Pryce G, Baker D. Endocannabinoids in Multiple Sclerosis and Amyotrophic Lateral Sclerosis. Handb Exp Pharmacol. 2015; 231:213-31. PMID: 26408162.
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    110. Rossi P, Shi L, Liu G, Barbieri CM, Lee HW, Grant TD, Luft JR, Xiao R, Acton TB, Snell EH, Montelione GT, Baker D, Lange OF, Sgourakis NG. A hybrid NMR/SAXS-based approach for discriminating oligomeric protein interfaces using Rosetta. Proteins. 2015 Feb; 83(2):309-17. PMID: 25388768.
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    111. Parmeggiani F, Huang PS, Vorobiev S, Xiao R, Park K, Caprari S, Su M, Seetharaman J, Mao L, Janjua H, Montelione GT, Hunt J, Baker D. A general computational approach for repeat protein design. J Mol Biol. 2015 Jan 30; 427(2):563-75. PMID: 25451037.
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    112. Thyme SB, Song Y, Brunette TJ, Szeto MD, Kusak L, Bradley P, Baker D. Massively parallel determination and modeling of endonuclease substrate specificity. Nucleic Acids Res. 2014 Dec 16; 42(22):13839-52. PMID: 25389263.
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    113. Huang PS, Oberdorfer G, Xu C, Pei XY, Nannenga BL, Rogers JM, DiMaio F, Gonen T, Luisi B, Baker D. High thermodynamic stability of parametrically designed helical bundles. Science. 2014 Oct 24; 346(6208):481-485. PMID: 25342806.
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    114. Demers JP, Habenstein B, Loquet A, Kumar Vasa S, Giller K, Becker S, Baker D, Lange A, Sgourakis NG. High-resolution structure of the Shigella type-III secretion needle by solid-state NMR and cryo-electron microscopy. Nat Commun. 2014 Sep 29; 5:4976. PMID: 25264107.
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    115. Liu Y, Zhang X, Tan YL, Bhabha G, Ekiert DC, Kipnis Y, Bjelic S, Baker D, Kelly JW. De novo-designed enzymes as small-molecule-regulated fluorescence imaging tags and fluorescent reporters. J Am Chem Soc. 2014 Sep 24; 136(38):13102-5. PMID: 25209927.
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    116. Vranjkovic O, Gasser PJ, Gerndt CH, Baker DA, Mantsch JR. Stress-induced cocaine seeking requires a beta-2 adrenergic receptor-regulated pathway from the ventral bed nucleus of the stria terminalis that regulates CRF actions in the ventral tegmental area. J Neurosci. 2014 Sep 10; 34(37):12504-14. PMID: 25209288.
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    117. Flueck C, Baker DA. Malaria parasite epigenetics: when virulence and romance collide. Cell Host Microbe. 2014 Aug 13; 16(2):148-150. PMID: 25121742.
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    118. Resch JM, Albano R, Liu X, Hjelmhaug J, Lobner D, Baker DA, Choi S. Augmented cystine-glutamate exchange by pituitary adenylate cyclase-activating polypeptide signaling via the VPAC1 receptor. Synapse. 2014 Dec; 68(12):604-612. PMID: 25066643.
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    119. Connery AK, Baker DA, Kirk JW, Kirkwood MW. The effects of multiple mild traumatic brain injuries on acute injury presentation and neuropsychological recovery in children. Neurosurgery. 2014 Jul; 75(1):31-6. PMID: 24618798.
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    120. Procko E, Berguig GY, Shen BW, Song Y, Frayo S, Convertine AJ, Margineantu D, Booth G, Correia BE, Cheng Y, Schief WR, Hockenbery DM, Press OW, Stoddard BL, Stayton PS, Baker D. A computationally designed inhibitor of an Epstein-Barr viral Bcl-2 protein induces apoptosis in infected cells. Cell. 2014 Jun 19; 157(7):1644-1656. PMID: 24949974.
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    121. King NP, Bale JB, Sheffler W, McNamara DE, Gonen S, Gonen T, Yeates TO, Baker D. Accurate design of co-assembling multi-component protein nanomaterials. Nature. 2014 Jun 05; 510(7503):103-8. PMID: 24870237.
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    122. Chen KY, Sun J, Salvo JS, Baker D, Barth P. High-resolution modeling of transmembrane helical protein structures from distant homologues. PLoS Comput Biol. 2014 May; 10(5):e1003636. PMID: 24854015.
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    123. Lutgen V, Resch J, Qualmann K, Raddatz NJ, Panhans C, Olander EM, Kong L, Choi S, Mantsch JR, Baker DA. Behavioral assessment of acute inhibition of system xc (-) in rats. Psychopharmacology (Berl). 2014 Dec; 231(24):4637-47. PMID: 24828877.
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    124. Baker D, Amor S. Experimental autoimmune encephalomyelitis is a good model of multiple sclerosis if used wisely. Mult Scler Relat Disord. 2014 Sep; 3(5):555-64. PMID: 26265267.
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    125. Tewari R, Patzewitz EM, Poulin B, Stewart L, Baker DA. Development of a transgenic Plasmodium berghei line (Pb pfpkg) expressing the P. falciparum cGMP-dependent protein kinase, a novel antimalarial drug target. PLoS One. 2014; 9(5):e96923. PMID: 24805991.
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    126. Mazor R, Eberle JA, Hu X, Vassall AN, Onda M, Beers R, Lee EC, Kreitman RJ, Lee B, Baker D, King C, Hassan R, Benhar I, Pastan I. Recombinant immunotoxin for cancer treatment with low immunogenicity by identification and silencing of human T-cell epitopes. Proc Natl Acad Sci U S A. 2014 Jun 10; 111(23):8571-6. PMID: 24799704.
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    127. Ovchinnikov S, Kamisetty H, Baker D. Robust and accurate prediction of residue-residue interactions across protein interfaces using evolutionary information. Elife. 2014 May 01; 3:e02030. PMID: 24842992.
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    128. Rajagopalan S, Wang C, Yu K, Kuzin AP, Richter F, Lew S, Miklos AE, Matthews ML, Seetharaman J, Su M, Hunt JF, Cravatt BF, Baker D. Design of activated serine-containing catalytic triads with atomic-level accuracy. Nat Chem Biol. 2014 May; 10(5):386-91. PMID: 24705591.
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    129. McReynolds JR, Vranjkovic O, Thao M, Baker DA, Makky K, Lim Y, Mantsch JR. Beta-2 adrenergic receptors mediate stress-evoked reinstatement of cocaine-induced conditioned place preference and increases in CRF mRNA in the bed nucleus of the stria terminalis in mice. Psychopharmacology (Berl). 2014 Oct; 231(20):3953-63. PMID: 24696080.
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    130. Wang Y, Khan IF, Boissel S, Jarjour J, Pangallo J, Thyme S, Baker D, Scharenberg AM, Rawlings DJ. Progressive engineering of a homing endonuclease genome editing reagent for the murine X-linked immunodeficiency locus. Nucleic Acids Res. 2014 Jun; 42(10):6463-75. PMID: 24682825.
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    131. Browne L, Lidster K, Al-Izki S, Clutterbuck L, Posada C, Chan AW, Riddall D, Garthwaite J, Baker D, Selwood DL. Imidazol-1-ylethylindazole voltage-gated sodium channel ligands are neuroprotective during optic neuritis in a mouse model of multiple sclerosis. J Med Chem. 2014 Apr 10; 57(7):2942-52. PMID: 24601592.
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    132. Kirkwood MW, Peterson RL, Connery AK, Baker DA, Grubenhoff JA. Postconcussive symptom exaggeration after pediatric mild traumatic brain injury. Pediatrics. 2014 Apr; 133(4):643-50. PMID: 24616360.
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    133. Brochet M, Collins MO, Smith TK, Thompson E, Sebastian S, Volkmann K, Schwach F, Chappell L, Gomes AR, Berriman M, Rayner JC, Baker DA, Choudhary J, Billker O. Phosphoinositide metabolism links cGMP-dependent protein kinase G to essential Ca²? signals at key decision points in the life cycle of malaria parasites. PLoS Biol. 2014 Mar; 12(3):e1001806. PMID: 24594931.
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    134. Liu Y, Tan YL, Zhang X, Bhabha G, Ekiert DC, Genereux JC, Cho Y, Kipnis Y, Bjelic S, Baker D, Kelly JW. Small molecule probes to quantify the functional fraction of a specific protein in a cell with minimal folding equilibrium shifts. Proc Natl Acad Sci U S A. 2014 Mar 25; 111(12):4449-54. PMID: 24591605.
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    135. Kafsack BF, Rovira-Graells N, Clark TG, Bancells C, Crowley VM, Campino SG, Williams AE, Drought LG, Kwiatkowski DP, Baker DA, Cortés A, Llinás M. A transcriptional switch underlies commitment to sexual development in malaria parasites. Nature. 2014 Mar 13; 507(7491):248-52. PMID: 24572369.
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    136. Lavogina D, Budu A, Enkvist E, Hopp CS, Baker DA, Langsley G, Garcia CR, Uri A. Targeting Plasmodium falciparum protein kinases with adenosine analogue-oligoarginine conjugates. Exp Parasitol. 2014 Mar; 138:55-62. PMID: 24534615.
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    137. Kirk JW, Hutaff-Lee CF, Connery AK, Baker DA, Kirkwood MW. The relationship between the self-report BASC-2 validity indicators and performance validity test failure after pediatric mild traumatic brain injury. Assessment. 2014 Oct; 21(5):562-9. PMID: 24532649.
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    138. Correia BE, Bates JT, Loomis RJ, Baneyx G, Carrico C, Jardine JG, Rupert P, Correnti C, Kalyuzhniy O, Vittal V, Connell MJ, Stevens E, Schroeter A, Chen M, Macpherson S, Serra AM, Adachi Y, Holmes MA, Li Y, Klevit RE, Graham BS, Wyatt RT, Baker D, Strong RK, Crowe JE, Johnson PR, Schief WR. Proof of principle for epitope-focused vaccine design. Nature. 2014 Mar 13; 507(7491):201-6. PMID: 24499818.
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    139. Green CM, Kirk JW, Connery AK, Baker DA, Kirkwood MW. The use of the Rey 15-Item Test and recognition trial to evaluate noncredible effort after pediatric mild traumatic brain injury. J Clin Exp Neuropsychol. 2014; 36(3):261-7. PMID: 24479707.
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    140. Mao B, Tejero R, Baker D, Montelione GT. Protein NMR structures refined with Rosetta have higher accuracy relative to corresponding X-ray crystal structures. J Am Chem Soc. 2014 Feb 05; 136(5):1893-906. PMID: 24392845.
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    141. Baker D, Lidster K, Sottomayor A, Amor S. Two years later: journals are not yet enforcing the ARRIVE guidelines on reporting standards for pre-clinical animal studies. PLoS Biol. 2014 Jan; 12(1):e1001756. PMID: 24409096.
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    142. Strauch EM, Fleishman SJ, Baker D. Computational design of a pH-sensitive IgG binding protein. Proc Natl Acad Sci U S A. 2014 Jan 14; 111(2):675-80. PMID: 24381156.
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    143. Boissel S, Jarjour J, Astrakhan A, Adey A, Gouble A, Duchateau P, Shendure J, Stoddard BL, Certo MT, Baker D, Scharenberg AM. megaTALs: a rare-cleaving nuclease architecture for therapeutic genome engineering. Nucleic Acids Res. 2014 Feb; 42(4):2591-601. PMID: 24285304.
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    144. Thyme SB, Boissel SJ, Arshiya Quadri S, Nolan T, Baker DA, Park RU, Kusak L, Ashworth J, Baker D. Reprogramming homing endonuclease specificity through computational design and directed evolution. Nucleic Acids Res. 2014 Feb; 42(4):2564-76. PMID: 24270794.
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    145. Baker DA, Connery AK, Kirk JW, Kirkwood MW. Embedded performance validity indicators within the California Verbal Learning Test, Children's Version. Clin Neuropsychol. 2014; 28(1):116-27. PMID: 24229006.
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    146. Bjelic S, Kipnis Y, Wang L, Pianowski Z, Vorobiev S, Su M, Seetharaman J, Xiao R, Kornhaber G, Hunt JF, Tong L, Hilvert D, Baker D. Exploration of alternate catalytic mechanisms and optimization strategies for retroaldolase design. J Mol Biol. 2014 Jan 09; 426(1):256-71. PMID: 24161950.
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    147. Song Y, DiMaio F, Wang RY, Kim D, Miles C, Brunette T, Thompson J, Baker D. High-resolution comparative modeling with RosettaCM. Structure. 2013 Oct 08; 21(10):1735-42. PMID: 24035711.
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    148. Kamisetty H, Ovchinnikov S, Baker D. Assessing the utility of coevolution-based residue-residue contact predictions in a sequence- and structure-rich era. Proc Natl Acad Sci U S A. 2013 Sep 24; 110(39):15674-9. PMID: 24009338.
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    149. Tinberg CE, Khare SD, Dou J, Doyle L, Nelson JW, Schena A, Jankowski W, Kalodimos CG, Johnsson K, Stoddard BL, Baker D. Computational design of ligand-binding proteins with high affinity and selectivity. Nature. 2013 Sep 12; 501(7466):212-216. PMID: 24005320.
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    150. Cooper S, Khatib F, Baker D. Increasing public involvement in structural biology. Structure. 2013 Sep 03; 21(9):1482-4. PMID: 24010706.
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    151. Graf EN, Wheeler RA, Baker DA, Ebben AL, Hill JE, McReynolds JR, Robble MA, Vranjkovic O, Wheeler DS, Mantsch JR, Gasser PJ. Corticosterone acts in the nucleus accumbens to enhance dopamine signaling and potentiate reinstatement of cocaine seeking. J Neurosci. 2013 Jul 17; 33(29):11800-10. PMID: 23864669.
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    152. Procko E, Hedman R, Hamilton K, Seetharaman J, Fleishman SJ, Su M, Aramini J, Kornhaber G, Hunt JF, Tong L, Montelione GT, Baker D. Computational design of a protein-based enzyme inhibitor. J Mol Biol. 2013 Sep 23; 425(18):3563-75. PMID: 23827138.
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    153. DiMaio F, Zhang J, Chiu W, Baker D. Cryo-EM model validation using independent map reconstructions. Protein Sci. 2013 Jun; 22(6):865-8. PMID: 23592445.
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    154. Collins CR, Hackett F, Strath M, Penzo M, Withers-Martinez C, Baker DA, Blackman MJ. Malaria parasite cGMP-dependent protein kinase regulates blood stage merozoite secretory organelle discharge and egress. PLoS Pathog. 2013 May; 9(5):e1003344. PMID: 23675297.
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    155. Bergeron JR, Worrall LJ, Sgourakis NG, DiMaio F, Pfuetzner RA, Felise HB, Vuckovic M, Yu AC, Miller SI, Baker D, Strynadka NC. A refined model of the prototypical Salmonella SPI-1 T3SS basal body reveals the molecular basis for its assembly. PLoS Pathog. 2013; 9(4):e1003307. PMID: 23633951.
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    156. Geibel S, Procko E, Hultgren SJ, Baker D, Waksman G. Structural and energetic basis of folded-protein transport by the FimD usher. Nature. 2013 Apr 11; 496(7444):243-6. PMID: 23579681.
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    157. Zhao T, Podtburg TC, Zhao P, Chen D, Baker DA, Cords B, Doyle MP. Reduction by competitive bacteria of Listeria monocytogenes in biofilms and Listeria bacteria in floor drains in a ready-to-eat poultry processing plant. J Food Prot. 2013 Apr; 76(4):601-7. PMID: 23575121.
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    158. Jardine J, Julien JP, Menis S, Ota T, Kalyuzhniy O, McGuire A, Sok D, Huang PS, MacPherson S, Jones M, Nieusma T, Mathison J, Baker D, Ward AB, Burton DR, Stamatatos L, Nemazee D, Wilson IA, Schief WR. Rational HIV immunogen design to target specific germline B cell receptors. Science. 2013 May 10; 340(6133):711-6. PMID: 23539181.
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    159. Demers JP, Sgourakis NG, Gupta R, Loquet A, Giller K, Riedel D, Laube B, Kolbe M, Baker D, Becker S, Lange A. The common structural architecture of Shigella flexneri and Salmonella typhimurium type three secretion needles. PLoS Pathog. 2013 Mar; 9(3):e1003245. PMID: 23555258.
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    160. Bjelic S, Nivón LG, Çelebi-Ölçüm N, Kiss G, Rosewall CF, Lovick HM, Ingalls EL, Gallaher JL, Seetharaman J, Lew S, Montelione GT, Hunt JF, Michael FE, Houk KN, Baker D. Computational design of enone-binding proteins with catalytic activity for the Morita-Baylis-Hillman reaction. ACS Chem Biol. 2013 Apr 19; 8(4):749-57. PMID: 23330600.
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    161. Kirkwood MW, Connery AK, Kirk JW, Baker DA. Detecting performance invalidity in children: not quite as easy as A, B, C, 1, 2, 3 but automatized sequences appears promising. Child Neuropsychol. 2014 Mar; 20(2):245-52. PMID: 23297668.
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    162. Juneja VK, Baker DA, Thippareddi H, Snyder OP, Mohr TB. Growth potential of Clostridium perfringens from spores in acidified beef, pork, and poultry products during chilling. J Food Prot. 2013 Jan; 76(1):65-71. PMID: 23317858.
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    163. Fang J, Mehlich A, Koga N, Huang J, Koga R, Gao X, Hu C, Jin C, Rief M, Kast J, Baker D, Li H. Forced protein unfolding leads to highly elastic and tough protein hydrogels. Nat Commun. 2013; 4:2974. PMID: 24352111.
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    164. Lutgen V, Qualmann K, Resch J, Kong L, Choi S, Baker DA. Reduction in phencyclidine induced sensorimotor gating deficits in the rat following increased system xc? activity in the medial prefrontal cortex. Psychopharmacology (Berl). 2013 Apr; 226(3):531-40. PMID: 23192314.
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    165. Koga N, Tatsumi-Koga R, Liu G, Xiao R, Acton TB, Montelione GT, Baker D. Principles for designing ideal protein structures. Nature. 2012 Nov 08; 491(7423):222-7. PMID: 23135467.
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    166. Hopp CS, Flueck C, Solyakov L, Tobin A, Baker DA. Spatiotemporal and functional characterisation of the Plasmodium falciparum cGMP-dependent protein kinase. PLoS One. 2012; 7(11):e48206. PMID: 23139764.
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    167. Harger M, Zheng L, Moon A, Ager C, An JH, Choe C, Lai YL, Mo B, Zong D, Smith MD, Egbert RG, Mills JH, Baker D, Pultz IS, Siegel JB. Expanding the product profile of a microbial alkane biosynthetic pathway. ACS Synth Biol. 2013 Jan 18; 2(1):59-62. PMID: 23656326.
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    168. Richter F, Blomberg R, Khare SD, Kiss G, Kuzin AP, Smith AJ, Gallaher J, Pianowski Z, Helgeson RC, Grjasnow A, Xiao R, Seetharaman J, Su M, Vorobiev S, Lew S, Forouhar F, Kornhaber GJ, Hunt JF, Montelione GT, Tong L, Houk KN, Hilvert D, Baker D. Computational design of catalytic dyads and oxyanion holes for ester hydrolysis. J Am Chem Soc. 2012 Oct 03; 134(39):16197-206. PMID: 22871159.
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    169. Lutgen V, Kong L, Kau KS, Madayag A, Mantsch JR, Baker DA. Time course of cocaine-induced behavioral and neurochemical plasticity. Addict Biol. 2014 Jul; 19(4):529-38. PMID: 22970924.
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    170. Kipnis Y, Baker D. Comparison of designed and randomly generated catalysts for simple chemical reactions. Protein Sci. 2012 Sep; 21(9):1388-95. PMID: 22811380.
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    171. Tyka MD, Jung K, Baker D. Efficient sampling of protein conformational space using fast loop building and batch minimization on highly parallel computers. J Comput Chem. 2012 Dec 05; 33(31):2483-91. PMID: 22847521.
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    172. Bridges R, Lutgen V, Lobner D, Baker DA. Thinking outside the cleft to understand synaptic activity: contribution of the cystine-glutamate antiporter (System xc-) to normal and pathological glutamatergic signaling. Pharmacol Rev. 2012 Jul; 64(3):780-802. PMID: 22759795.
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    173. Baker DA, Stevenson DW, Little DP. DNA barcode identification of black cohosh herbal dietary supplements. J AOAC Int. 2012 Jul-Aug; 95(4):1023-34. PMID: 22970567.
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    174. Baxter S, Lambert AR, Kuhar R, Jarjour J, Kulshina N, Parmeggiani F, Danaher P, Gano J, Baker D, Stoddard BL, Scharenberg AM. Engineering domain fusion chimeras from I-OnuI family LAGLIDADG homing endonucleases. Nucleic Acids Res. 2012 Sep; 40(16):7985-8000. PMID: 22684507.
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    175. Thompson JM, Sgourakis NG, Liu G, Rossi P, Tang Y, Mills JL, Szyperski T, Montelione GT, Baker D. Accurate protein structure modeling using sparse NMR data and homologous structure information. Proc Natl Acad Sci U S A. 2012 Jun 19; 109(25):9875-80. PMID: 22665781.
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    176. King NP, Sheffler W, Sawaya MR, Vollmar BS, Sumida JP, André I, Gonen T, Yeates TO, Baker D. Computational design of self-assembling protein nanomaterials with atomic level accuracy. Science. 2012 Jun 01; 336(6085):1171-4. PMID: 22654060.
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    177. Vranjkovic O, Hang S, Baker DA, Mantsch JR. ß-adrenergic receptor mediation of stress-induced reinstatement of extinguished cocaine-induced conditioned place preference in mice: roles for ß1 and ß2 adrenergic receptors. J Pharmacol Exp Ther. 2012 Aug; 342(2):541-51. PMID: 22593095.
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    178. Hopp CS, Bowyer PW, Baker DA. The role of cGMP signalling in regulating life cycle progression of Plasmodium. Microbes Infect. 2012 Aug; 14(10):831-7. PMID: 22613210.
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    179. Wu W, Ahlsen G, Baker D, Shapiro L, Zipursky SL. Complementary chimeric isoforms reveal Dscam1 binding specificity in vivo. Neuron. 2012 Apr 26; 74(2):261-8. PMID: 22542180.
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    180. Althoff EA, Wang L, Jiang L, Giger L, Lassila JK, Wang Z, Smith M, Hari S, Kast P, Herschlag D, Hilvert D, Baker D. Robust design and optimization of retroaldol enzymes. Protein Sci. 2012 May; 21(5):717-26. PMID: 22407837.
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    181. Thyme SB, Baker D, Bradley P. Improved modeling of side-chain--base interactions and plasticity in protein--DNA interface design. J Mol Biol. 2012 Jun 08; 419(3-4):255-74. PMID: 22426128.
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    182. Krzysiak TC, Jung J, Thompson J, Baker D, Gronenborn AM. APOBEC2 is a monomer in solution: implications for APOBEC3G models. Biochemistry. 2012 Mar 06; 51(9):2008-17. PMID: 22339232.
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    183. Eiben CB, Siegel JB, Bale JB, Cooper S, Khatib F, Shen BW, Players F, Stoddard BL, Popovic Z, Baker D. Increased Diels-Alderase activity through backbone remodeling guided by Foldit players. Nat Biotechnol. 2012 Jan 22; 30(2):190-2. PMID: 22267011.
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    184. Brzovic PS, Heikaus CC, Kisselev L, Vernon R, Herbig E, Pacheco D, Warfield L, Littlefield P, Baker D, Klevit RE, Hahn S. The acidic transcription activator Gcn4 binds the mediator subunit Gal11/Med15 using a simple protein interface forming a fuzzy complex. Mol Cell. 2011 Dec 23; 44(6):942-53. PMID: 22195967.
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    185. Yarov-Yarovoy V, DeCaen PG, Westenbroek RE, Pan CY, Scheuer T, Baker D, Catterall WA. Structural basis for gating charge movement in the voltage sensor of a sodium channel. Proc Natl Acad Sci U S A. 2012 Jan 10; 109(2):E93-102. PMID: 22160714.
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    186. Khatib F, Cooper S, Tyka MD, Xu K, Makedon I, Popovic Z, Baker D, Players F. Algorithm discovery by protein folding game players. Proc Natl Acad Sci U S A. 2011 Nov 22; 108(47):18949-53. PMID: 22065763.
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    187. Wang L, Althoff EA, Bolduc J, Jiang L, Moody J, Lassila JK, Giger L, Hilvert D, Stoddard B, Baker D. Structural analyses of covalent enzyme-substrate analog complexes reveal strengths and limitations of de novo enzyme design. J Mol Biol. 2012 Jan 20; 415(3):615-25. PMID: 22075445.
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    188. Azoitei ML, Ban YE, Julien JP, Bryson S, Schroeter A, Kalyuzhniy O, Porter JR, Adachi Y, Baker D, Pai EF, Schief WR. Computational design of high-affinity epitope scaffolds by backbone grafting of a linear epitope. J Mol Biol. 2012 Jan 06; 415(1):175-92. PMID: 22061265.
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    189. Azoitei ML, Correia BE, Ban YE, Carrico C, Kalyuzhniy O, Chen L, Schroeter A, Huang PS, McLellan JS, Kwong PD, Baker D, Strong RK, Schief WR. Computation-guided backbone grafting of a discontinuous motif onto a protein scaffold. Science. 2011 Oct 21; 334(6054):373-6. PMID: 22021856.
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    190. Fleishman SJ, Whitehead TA, Strauch EM, Corn JE, Qin S, Zhou HX, Mitchell JC, Demerdash ON, Takeda-Shitaka M, Terashi G, Moal IH, Li X, Bates PA, Zacharias M, Park H, Ko JS, Lee H, Seok C, Bourquard T, Bernauer J, Poupon A, Azé J, Soner S, Ovali SK, Ozbek P, Tal NB, Haliloglu T, Hwang H, Vreven T, Pierce BG, Weng Z, Pérez-Cano L, Pons C, Fernández-Recio J, Jiang F, Yang F, Gong X, Cao L, Xu X, Liu B, Wang P, Li C, Wang C, Robert CH, Guharoy M, Liu S, Huang Y, Li L, Guo D, Chen Y, Xiao Y, London N, Itzhaki Z, Schueler-Furman O, Inbar Y, Potapov V, Cohen M, Schreiber G, Tsuchiya Y, Kanamori E, Standley DM, Nakamura H, Kinoshita K, Driggers CM, Hall RG, Morgan JL, Hsu VL, Zhan J, Yang Y, Zhou Y, Kastritis PL, Bonvin AM, Zhang W, Camacho CJ, Kilambi KP, Sircar A, Gray JJ, Ohue M, Uchikoga N, Matsuzaki Y, Ishida T, Akiyama Y, Khashan R, Bush S, Fouches D, Tropsha A, Esquivel-Rodríguez J, Kihara D, Stranges PB, Jacak R, Kuhlman B, Huang SY, Zou X, Wodak SJ, Janin J, Baker D. Community-wide assessment of protein-interface modeling suggests improvements to design methodology. J Mol Biol. 2011 Nov 25; 414(2):289-302. PMID: 22001016.
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    191. Fleishman SJ, Corn JE, Strauch EM, Whitehead TA, Karanicolas J, Baker D. Hotspot-centric de novo design of protein binders. J Mol Biol. 2011 Nov 11; 413(5):1047-62. PMID: 21945116.
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    192. Baker DA, Ferris DG, Martens MG, Fife KH, Tyring SK, Edwards L, Nelson A, Ault K, Trofatter KF, Liu T, Levy S, Wu J. Imiquimod 3.75% cream applied daily to treat anogenital warts: combined results from women in two randomized, placebo-controlled studies. Infect Dis Obstet Gynecol. 2011; 2011:806105. PMID: 21876641.
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    193. Blacktop JM, Seubert C, Baker DA, Ferda N, Lee G, Graf EN, Mantsch JR. Augmented cocaine seeking in response to stress or CRF delivered into the ventral tegmental area following long-access self-administration is mediated by CRF receptor type 1 but not CRF receptor type 2. J Neurosci. 2011 Aug 03; 31(31):11396-403. PMID: 21813699.
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    194. Szeto MD, Boissel SJ, Baker D, Thyme SB. Mining endonuclease cleavage determinants in genomic sequence data. J Biol Chem. 2011 Sep 16; 286(37):32617-27. PMID: 21778233.
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    195. Wu SJ, Eiben CB, Carra JH, Huang I, Zong D, Liu P, Wu CT, Nivala J, Dunbar J, Huber T, Senft J, Schokman R, Smith MD, Mills JH, Friedlander AM, Baker D, Siegel JB. Improvement of a potential anthrax therapeutic by computational protein design. J Biol Chem. 2011 Sep 16; 286(37):32586-92. PMID: 21768086.
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    196. Jackson SJ, Giovannoni G, Baker D. Fingolimod modulates microglial activation to augment markers of remyelination. J Neuroinflammation. 2011 Jul 05; 8:76. PMID: 21729281.
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    197. Fleishman SJ, Leaver-Fay A, Corn JE, Strauch EM, Khare SD, Koga N, Ashworth J, Murphy P, Richter F, Lemmon G, Meiler J, Baker D. RosettaScripts: a scripting language interface to the Rosetta macromolecular modeling suite. PLoS One. 2011; 6(6):e20161. PMID: 21731610.
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    198. Sievers SA, Karanicolas J, Chang HW, Zhao A, Jiang L, Zirafi O, Stevens JT, Münch J, Baker D, Eisenberg D. Structure-based design of non-natural amino-acid inhibitors of amyloid fibril formation. Nature. 2011 Jun 15; 475(7354):96-100. PMID: 21677644.
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    199. Ayoub SS, Pryce G, Seed MP, Bolton C, Flower RJ, Baker D. Paracetamol-induced hypothermia is independent of cannabinoids and transient receptor potential vanilloid-1 and is not mediated by AM404. Drug Metab Dispos. 2011 Sep; 39(9):1689-95. PMID: 21628499.
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    200. Fleishman SJ, Whitehead TA, Ekiert DC, Dreyfus C, Corn JE, Strauch EM, Wilson IA, Baker D. Computational design of proteins targeting the conserved stem region of influenza hemagglutinin. Science. 2011 May 13; 332(6031):816-21. PMID: 21566186.
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    201. DiMaio F, Terwilliger TC, Read RJ, Wlodawer A, Oberdorfer G, Wagner U, Valkov E, Alon A, Fass D, Axelrod HL, Das D, Vorobiev SM, Iwaï H, Pokkuluri PR, Baker D. Improved molecular replacement by density- and energy-guided protein structure optimization. Nature. 2011 May 26; 473(7348):540-3. PMID: 21532589.
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    202. Windbichler N, Menichelli M, Papathanos PA, Thyme SB, Li H, Ulge UY, Hovde BT, Baker D, Monnat RJ, Burt A, Crisanti A. A synthetic homing endonuclease-based gene drive system in the human malaria mosquito. Nature. 2011 May 12; 473(7346):212-5. PMID: 21508956.
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    203. Song Y, Tyka M, Leaver-Fay A, Thompson J, Baker D. Structure-guided forcefield optimization. Proteins. 2011 Jun; 79(6):1898-909. PMID: 21488100.
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    204. Baker DA, Pressley A, Meek L, Figueroa R, Yates B, Dix L. HSV serologic testing for pregnant women: willingness to be tested and factors affecting testing. Infect Dis Obstet Gynecol. 2011; 2011:874820. PMID: 21603233.
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    205. Fleishman SJ, Khare SD, Koga N, Baker D. Restricted sidechain plasticity in the structures of native proteins and complexes. Protein Sci. 2011 Apr; 20(4):753-7. PMID: 21432939.
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    206. Graf EN, Hoks MA, Baumgardner J, Sierra J, Vranjkovic O, Bohr C, Baker DA, Mantsch JR. Adrenal activity during repeated long-access cocaine self-administration is required for later CRF-Induced and CRF-dependent stressor-induced reinstatement in rats. Neuropsychopharmacology. 2011 Jun; 36(7):1444-54. PMID: 21412222.
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    207. Carter AT, Pearson BM, Crossman LC, Drou N, Heavens D, Baker D, Febrer M, Caccamo M, Grant KA, Peck MW. Complete genome sequence of the proteolytic Clostridium botulinum type A5 (B3') strain H04402 065. J Bacteriol. 2011 May; 193(9):2351-2. PMID: 21378191.
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    208. Ulge UY, Baker DA, Monnat RJ. Comprehensive computational design of mCreI homing endonuclease cleavage specificity for genome engineering. Nucleic Acids Res. 2011 May; 39(10):4330-9. PMID: 21288879.
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    209. Plet J, Wasson A, Ariel F, Le Signor C, Baker D, Mathesius U, Crespi M, Frugier F. MtCRE1-dependent cytokinin signaling integrates bacterial and plant cues to coordinate symbiotic nodule organogenesis in Medicago truncatula. Plant J. 2011 Feb; 65(4):622-33. PMID: 21244535.
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    210. Chen DH, Baker ML, Hryc CF, DiMaio F, Jakana J, Wu W, Dougherty M, Haase-Pettingell C, Schmid MF, Jiang W, Baker D, King JA, Chiu W. Structural basis for scaffolding-mediated assembly and maturation of a dsDNA virus. Proc Natl Acad Sci U S A. 2011 Jan 25; 108(4):1355-60. PMID: 21220301.
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    211. Figueroa-Guzman Y, Mueller C, Vranjkovic O, Wisniewski S, Yang Z, Li SJ, Bohr C, Graf EN, Baker DA, Mantsch JR. Oral administration of levo-tetrahydropalmatine attenuates reinstatement of extinguished cocaine seeking by cocaine, stress or drug-associated cues in rats. Drug Alcohol Depend. 2011 Jul 01; 116(1-3):72-9. PMID: 21196089.
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    212. Baker DA. Cyclic nucleotide signalling in malaria parasites. Cell Microbiol. 2011 Mar; 13(3):331-9. PMID: 21176056.
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    213. Amen SL, Piacentine LB, Ahmad ME, Li SJ, Mantsch JR, Risinger RC, Baker DA. Repeated N-acetyl cysteine reduces cocaine seeking in rodents and craving in cocaine-dependent humans. Neuropsychopharmacology. 2011 Mar; 36(4):871-8. PMID: 21160464.
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    214. Weerapana E, Wang C, Simon GM, Richter F, Khare S, Dillon MB, Bachovchin DA, Mowen K, Baker D, Cravatt BF. Quantitative reactivity profiling predicts functional cysteines in proteomes. Nature. 2010 Dec 09; 468(7325):790-5. PMID: 21085121.
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    215. Fleishman SJ, Corn JE, Strauch EM, Whitehead TA, Andre I, Thompson J, Havranek JJ, Das R, Bradley P, Baker D. Rosetta in CAPRI rounds 13-19. Proteins. 2010 Nov 15; 78(15):3212-8. PMID: 20597089.
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    216. Tyka MD, Keedy DA, André I, Dimaio F, Song Y, Richardson DC, Richardson JS, Baker D. Alternate states of proteins revealed by detailed energy landscape mapping. J Mol Biol. 2011 Jan 14; 405(2):607-18. PMID: 21073878.
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    217. Sampathkumar P, Lu F, Zhao X, Li Z, Gilmore J, Bain K, Rutter ME, Gheyi T, Schwinn KD, Bonanno JB, Pieper U, Fajardo JE, Fiser A, Almo SC, Swaminathan S, Chance MR, Baker D, Atwell S, Thompson DA, Emtage JS, Wasserman SR, Sali A, Sauder JM, Burley SK. Structure of a putative BenF-like porin from Pseudomonas fluorescens Pf-5 at 2.6 A resolution. Proteins. 2010 Nov 01; 78(14):3056-62. PMID: 20737437.
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    218. Sheffler W, Baker D. RosettaHoles2: a volumetric packing measure for protein structure refinement and validation. Protein Sci. 2010 Oct; 19(10):1991-5. PMID: 20665689.
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    219. Baker D. An exciting but challenging road ahead for computational enzyme design. Protein Sci. 2010 Oct; 19(10):1817-9. PMID: 20717908.
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    220. Ofek G, Guenaga FJ, Schief WR, Skinner J, Baker D, Wyatt R, Kwong PD. Elicitation of structure-specific antibodies by epitope scaffolds. Proc Natl Acad Sci U S A. 2010 Oct 19; 107(42):17880-7. PMID: 20876137.
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    221. Roukens MG, Alloul-Ramdhani M, Baan B, Kobayashi K, Peterson-Maduro J, van Dam H, Schulte-Merker S, Baker DA. Control of endothelial sprouting by a Tel-CtBP complex. Nat Cell Biol. 2010 Oct; 12(10):933-42. PMID: 20835243.
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    222. Mantsch JR, Wisniewski S, Vranjkovic O, Peters C, Becker A, Valentine A, Li SJ, Baker DA, Yang Z. Levo-tetrahydropalmatine attenuates cocaine self-administration under a progressive-ratio schedule and cocaine discrimination in rats. Pharmacol Biochem Behav. 2010 Dec; 97(2):310-6. PMID: 20816889.
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    223. Correia BE, Ban YE, Holmes MA, Xu H, Ellingson K, Kraft Z, Carrico C, Boni E, Sather DN, Zenobia C, Burke KY, Bradley-Hewitt T, Bruhn-Johannsen JF, Kalyuzhniy O, Baker D, Strong RK, Stamatatos L, Schief WR. Computational design of epitope-scaffolds allows induction of antibodies specific for a poorly immunogenic HIV vaccine epitope. Structure. 2010 Sep 08; 18(9):1116-26. PMID: 20826338.
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    224. Tang Y, Schneider WM, Shen Y, Raman S, Inouye M, Baker D, Roth MJ, Montelione GT. Fully automated high-quality NMR structure determination of small (2)H-enriched proteins. J Struct Funct Genomics. 2010 Dec; 11(4):223-32. PMID: 20734145.
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    225. Cooper S, Khatib F, Treuille A, Barbero J, Lee J, Beenen M, Leaver-Fay A, Baker D, Popovic Z, Players F. Predicting protein structures with a multiplayer online game. Nature. 2010 Aug 05; 466(7307):756-60. PMID: 20686574.
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    226. Sanowar S, Singh P, Pfuetzner RA, André I, Zheng H, Spreter T, Strynadka NC, Gonen T, Baker D, Goodlett DR, Miller SI. Interactions of the transmembrane polymeric rings of the Salmonella enterica serovar Typhimurium type III secretion system. MBio. 2010 Aug 03; 1(3). PMID: 20824104.
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    227. Smagghe BJ, Huang PS, Ban YE, Baker D, Springer TA. Modulation of integrin activation by an entropic spring in the {beta}-knee. J Biol Chem. 2010 Oct 22; 285(43):32954-66. PMID: 20670939.
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    228. Siegel JB, Zanghellini A, Lovick HM, Kiss G, Lambert AR, St Clair JL, Gallaher JL, Hilvert D, Gelb MH, Stoddard BL, Houk KN, Michael FE, Baker D. Computational design of an enzyme catalyst for a stereoselective bimolecular Diels-Alder reaction. Science. 2010 Jul 16; 329(5989):309-13. PMID: 20647463.
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    229. Mantsch JR, Weyer A, Vranjkovic O, Beyer CE, Baker DA, Caretta H. Involvement of noradrenergic neurotransmission in the stress- but not cocaine-induced reinstatement of extinguished cocaine-induced conditioned place preference in mice: role for ß-2 adrenergic receptors. Neuropsychopharmacology. 2010 Oct; 35(11):2165-78. PMID: 20613718.
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    230. Zelter A, Hoopmann MR, Vernon R, Baker D, MacCoss MJ, Davis TN. Isotope signatures allow identification of chemically cross-linked peptides by mass spectrometry: a novel method to determine interresidue distances in protein structures through cross-linking. J Proteome Res. 2010 Jul 02; 9(7):3583-9. PMID: 20476776.
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    231. Meenan NA, Sharma A, Fleishman SJ, Macdonald CJ, Morel B, Boetzel R, Moore GR, Baker D, Kleanthous C. The structural and energetic basis for high selectivity in a high-affinity protein-protein interaction. Proc Natl Acad Sci U S A. 2010 Jun 01; 107(22):10080-5. PMID: 20479265.
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    232. Dvorin JD, Martyn DC, Patel SD, Grimley JS, Collins CR, Hopp CS, Bright AT, Westenberger S, Winzeler E, Blackman MJ, Baker DA, Wandless TJ, Duraisingh MT. A plant-like kinase in Plasmodium falciparum regulates parasite egress from erythrocytes. Science. 2010 May 14; 328(5980):910-2. PMID: 20466936.
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    233. Ashworth J, Taylor GK, Havranek JJ, Quadri SA, Stoddard BL, Baker D. Computational reprogramming of homing endonuclease specificity at multiple adjacent base pairs. Nucleic Acids Res. 2010 Sep; 38(16):5601-8. PMID: 20435674.
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    234. Baker DA. Malaria gametocytogenesis. Mol Biochem Parasitol. 2010 Aug; 172(2):57-65. PMID: 20381542.
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    235. Wang C, Vernon R, Lange O, Tyka M, Baker D. Prediction of structures of zinc-binding proteins through explicit modeling of metal coordination geometry. Protein Sci. 2010 Mar; 19(3):494-506. PMID: 20054832.
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    236. Raman S, Lange OF, Rossi P, Tyka M, Wang X, Aramini J, Liu G, Ramelot TA, Eletsky A, Szyperski T, Kennedy MA, Prestegard J, Montelione GT, Baker D. NMR structure determination for larger proteins using backbone-only data. Science. 2010 Feb 19; 327(5968):1014-8. PMID: 20133520.
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    237. Shen Y, Bryan PN, He Y, Orban J, Baker D, Bax A. De novo structure generation using chemical shifts for proteins with high-sequence identity but different folds. Protein Sci. 2010 Feb; 19(2):349-56. PMID: 19998407.
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    238. Raman S, Huang YJ, Mao B, Rossi P, Aramini JM, Liu G, Montelione GT, Baker D. Accurate automated protein NMR structure determination using unassigned NOESY data. J Am Chem Soc. 2010 Jan 13; 132(1):202-7. PMID: 20000319.
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    239. Madayag A, Kau KS, Lobner D, Mantsch JR, Wisniewski S, Baker DA. Drug-induced plasticity contributing to heightened relapse susceptibility: neurochemical changes and augmented reinstatement in high-intake rats. J Neurosci. 2010 Jan 06; 30(1):210-7. PMID: 20053903.
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    240. Leung CC, Kellogg E, Kuhnert A, Hänel F, Baker D, Glover JN. Insights from the crystal structure of the sixth BRCT domain of topoisomerase IIbeta binding protein 1. Protein Sci. 2010 Jan; 19(1):162-7. PMID: 19937654.
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    241. Taylor HM, McRobert L, Grainger M, Sicard A, Dluzewski AR, Hopp CS, Holder AA, Baker DA. The malaria parasite cyclic GMP-dependent protein kinase plays a central role in blood-stage schizogony. Eukaryot Cell. 2010 Jan; 9(1):37-45. PMID: 19915077.
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    242. Thyme SB, Jarjour J, Takeuchi R, Havranek JJ, Ashworth J, Scharenberg AM, Stoddard BL, Baker D. Exploitation of binding energy for catalysis and design. Nature. 2009 Oct 29; 461(7268):1300-4. PMID: 19865174.
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    243. Das R, André I, Shen Y, Wu Y, Lemak A, Bansal S, Arrowsmith CH, Szyperski T, Baker D. Simultaneous prediction of protein folding and docking at high resolution. Proc Natl Acad Sci U S A. 2009 Nov 10; 106(45):18978-83. PMID: 19864631.
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    244. Moon RW, Taylor CJ, Bex C, Schepers R, Goulding D, Janse CJ, Waters AP, Baker DA, Billker O. A cyclic GMP signalling module that regulates gliding motility in a malaria parasite. PLoS Pathog. 2009 Sep; 5(9):e1000599. PMID: 19779564.
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    245. Kim DE, Blum B, Bradley P, Baker D. Sampling bottlenecks in de novo protein structure prediction. J Mol Biol. 2009 Oct 16; 393(1):249-60. PMID: 19646450.
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    246. DiMaio F, Tyka MD, Baker ML, Chiu W, Baker D. Refinement of protein structures into low-resolution density maps using rosetta. J Mol Biol. 2009 Sep 11; 392(1):181-90. PMID: 19596339.
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    247. Havranek JJ, Baker D. Motif-directed flexible backbone design of functional interactions. Protein Sci. 2009 Jun; 18(6):1293-305. PMID: 19472357.
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    248. Murphy PM, Bolduc JM, Gallaher JL, Stoddard BL, Baker D. Alteration of enzyme specificity by computational loop remodeling and design. Proc Natl Acad Sci U S A. 2009 Jun 09; 106(23):9215-20. PMID: 19470646.
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    249. Zhu J, Luo BH, Barth P, Schonbrun J, Baker D, Springer TA. The structure of a receptor with two associating transmembrane domains on the cell surface: integrin alphaIIbbeta3. Mol Cell. 2009 Apr 24; 34(2):234-49. PMID: 19394300.
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    250. Ashworth J, Baker D. Assessment of the optimization of affinity and specificity at protein-DNA interfaces. Nucleic Acids Res. 2009 Jun; 37(10):e73. PMID: 19389725.
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    251. Dietrich JA, Yoshikuni Y, Fisher KJ, Woolard FX, Ockey D, McPhee DJ, Renninger NS, Chang MC, Baker D, Keasling JD. A novel semi-biosynthetic route for artemisinin production using engineered substrate-promiscuous P450(BM3). ACS Chem Biol. 2009 Apr 17; 4(4):261-7. PMID: 19271725.
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    252. Hooper C, Pinteaux-Jones F, Fry VA, Sevastou IG, Baker D, Heales SJ, Pocock JM. Differential effects of albumin on microglia and macrophages; implications for neurodegeneration following blood-brain barrier damage. J Neurochem. 2009 May; 109(3):694-705. PMID: 19187440.
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    253. Das R, Baker D. Prospects for de novo phasing with de novo protein models. Acta Crystallogr D Biol Crystallogr. 2009 Feb; 65(Pt 2):169-75. PMID: 19171972.
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    254. Leber W, Skippen A, Fivelman QL, Bowyer PW, Cockcroft S, Baker DA. A unique phosphatidylinositol 4-phosphate 5-kinase is activated by ADP-ribosylation factor in Plasmodium falciparum. Int J Parasitol. 2009 May; 39(6):645-53. PMID: 19171150.
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    255. Raman S, Vernon R, Thompson J, Tyka M, Sadreyev R, Pei J, Kim D, Kellogg E, DiMaio F, Lange O, Kinch L, Sheffler W, Kim BH, Das R, Grishin NV, Baker D. Structure prediction for CASP8 with all-atom refinement using Rosetta. Proteins. 2009; 77 Suppl 9:89-99. PMID: 19701941.
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    256. Krieger E, Joo K, Lee J, Lee J, Raman S, Thompson J, Tyka M, Baker D, Karplus K. Improving physical realism, stereochemistry, and side-chain accuracy in homology modeling: Four approaches that performed well in CASP8. Proteins. 2009; 77 Suppl 9:114-22. PMID: 19768677.
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    257. Schnick C, Polley SD, Fivelman QL, Ranford-Cartwright LC, Wilkinson SR, Brannigan JA, Wilkinson AJ, Baker DA. Structure and non-essential function of glycerol kinase in Plasmodium falciparum blood stages. Mol Microbiol. 2009 Jan; 71(2):533-45. PMID: 19040641.
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    258. Luo BH, Karanicolas J, Harmacek LD, Baker D, Springer TA. Rationally designed integrin beta3 mutants stabilized in the high affinity conformation. J Biol Chem. 2009 Feb 06; 284(6):3917-24. PMID: 19019827.
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    259. André I, Strauss CE, Kaplan DB, Bradley P, Baker D. Emergence of symmetry in homooligomeric biological assemblies. Proc Natl Acad Sci U S A. 2008 Oct 21; 105(42):16148-52. PMID: 18849473.
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    260. Sawaya MR, Wojtowicz WM, Andre I, Qian B, Wu W, Baker D, Eisenberg D, Zipursky SL. A double S shape provides the structural basis for the extraordinary binding specificity of Dscam isoforms. Cell. 2008 Sep 19; 134(6):1007-18. PMID: 18805093.
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    261. Pinteaux-Jones F, Sevastou IG, Fry VA, Heales S, Baker D, Pocock JM. Myelin-induced microglial neurotoxicity can be controlled by microglial metabotropic glutamate receptors. J Neurochem. 2008 Jul; 106(1):442-54. PMID: 18419765.
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    262. Kau KS, Madayag A, Mantsch JR, Grier MD, Abdulhameed O, Baker DA. Blunted cystine-glutamate antiporter function in the nucleus accumbens promotes cocaine-induced drug seeking. Neuroscience. 2008 Aug 13; 155(2):530-7. PMID: 18601982.
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    263. McRobert L, Taylor CJ, Deng W, Fivelman QL, Cummings RM, Polley SD, Billker O, Baker DA. Gametogenesis in malaria parasites is mediated by the cGMP-dependent protein kinase. PLoS Biol. 2008 Jun 03; 6(6):e139. PMID: 18532880.
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    264. Taylor CJ, McRobert L, Baker DA. Disruption of a Plasmodium falciparum cyclic nucleotide phosphodiesterase gene causes aberrant gametogenesis. Mol Microbiol. 2008 Jul; 69(1):110-8. PMID: 18452584.
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    265. Roukens MG, Alloul-Ramdhani M, Moghadasi S, Op den Brouw M, Baker DA. Downregulation of vertebrate Tel (ETV6) and Drosophila Yan is facilitated by an evolutionarily conserved mechanism of F-box-mediated ubiquitination. Mol Cell Biol. 2008 Jul; 28(13):4394-406. PMID: 18426905.
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    266. Keeble AH, Joachimiak LA, Maté MJ, Meenan N, Kirkpatrick N, Baker D, Kleanthous C. Experimental and computational analyses of the energetic basis for dual recognition of immunity proteins by colicin endonucleases. J Mol Biol. 2008 Jun 13; 379(4):745-59. PMID: 18471830.
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    267. Röthlisberger D, Khersonsky O, Wollacott AM, Jiang L, DeChancie J, Betker J, Gallaher JL, Althoff EA, Zanghellini A, Dym O, Albeck S, Houk KN, Tawfik DS, Baker D. Kemp elimination catalysts by computational enzyme design. Nature. 2008 May 08; 453(7192):190-5. PMID: 18354394.
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    268. Jiang L, Althoff EA, Clemente FR, Doyle L, Röthlisberger D, Zanghellini A, Gallaher JL, Betker JL, Tanaka F, Barbas CF, Hilvert D, Houk KN, Stoddard BL, Baker D. De novo computational design of retro-aldol enzymes. Science. 2008 Mar 07; 319(5868):1387-91. PMID: 18323453.
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    269. Roukens MG, Alloul-Ramdhani M, Vertegaal AC, Anvarian Z, Balog CI, Deelder AM, Hensbergen PJ, Baker DA. Identification of a new site of sumoylation on Tel (ETV6) uncovers a PIAS-dependent mode of regulating Tel function. Mol Cell Biol. 2008 Apr; 28(7):2342-57. PMID: 18212042.
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    270. Fan E, Baker D, Fields S, Gelb MH, Buckner FS, Van Voorhis WC, Phizicky E, Dumont M, Mehlin C, Grayhack E, Sullivan M, Verlinde C, Detitta G, Meldrum DR, Merritt EA, Earnest T, Soltis M, Zucker F, Myler PJ, Schoenfeld L, Kim D, Worthey L, Lacount D, Vignali M, Li J, Mondal S, Massey A, Carroll B, Gulde S, Luft J, Desoto L, Holl M, Caruthers J, Bosch J, Robien M, Arakaki T, Holmes M, Le Trong I, Hol WG. Structural genomics of pathogenic protozoa: an overview. Methods Mol Biol. 2008; 426:497-513. PMID: 18542886.
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    271. Das R, Baker D. Macromolecular modeling with rosetta. Annu Rev Biochem. 2008; 77:363-82. PMID: 18410248.
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    272. Baker D, Pryce G. The endocannabinoid system and multiple sclerosis. Curr Pharm Des. 2008; 14(23):2326-36. PMID: 18781983.
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    273. Madayag A, Lobner D, Kau KS, Mantsch JR, Abdulhameed O, Hearing M, Grier MD, Baker DA. Repeated N-acetylcysteine administration alters plasticity-dependent effects of cocaine. J Neurosci. 2007 Dec 19; 27(51):13968-76. PMID: 18094234.
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    274. Wang C, Schueler-Furman O, Andre I, London N, Fleishman SJ, Bradley P, Qian B, Baker D. RosettaDock in CAPRI rounds 6-12. Proteins. 2007 Dec 01; 69(4):758-63. PMID: 17671979.
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    275. Goobes G, Goobes R, Shaw WJ, Gibson JM, Long JR, Raghunathan V, Schueler-Furman O, Popham JM, Baker D, Campbell CT, Stayton PS, Drobny GP. The structure, dynamics, and energetics of protein adsorption-lessons learned from adsorption of statherin to hydroxyapatite. Magn Reson Chem. 2007 Dec; 45 Suppl 1:S32-47. PMID: 18172904.
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    276. Croxford JL, Pryce G, Jackson SJ, Ledent C, Giovannoni G, Pertwee RG, Yamamura T, Baker D. Cannabinoid-mediated neuroprotection, not immunosuppression, may be more relevant to multiple sclerosis. J Neuroimmunol. 2008 Jan; 193(1-2):120-9. PMID: 18037503.
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    277. McBeth C, Seamons A, Pizarro JC, Fleishman SJ, Baker D, Kortemme T, Goverman JM, Strong RK. A new twist in TCR diversity revealed by a forbidden alphabeta TCR. J Mol Biol. 2008 Feb 01; 375(5):1306-19. PMID: 18155234.
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    278. André I, Bradley P, Wang C, Baker D. Prediction of the structure of symmetrical protein assemblies. Proc Natl Acad Sci U S A. 2007 Nov 06; 104(45):17656-61. PMID: 17978193.
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    279. Qian B, Raman S, Das R, Bradley P, McCoy AJ, Read RJ, Baker D. High-resolution structure prediction and the crystallographic phase problem. Nature. 2007 Nov 08; 450(7167):259-64. PMID: 17934447.
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    280. Mantsch JR, Baker DA, Francis DM, Katz ES, Hoks MA, Serge JP. Stressor- and corticotropin releasing factor-induced reinstatement and active stress-related behavioral responses are augmented following long-access cocaine self-administration by rats. Psychopharmacology (Berl). 2008 Jan; 195(4):591-603. PMID: 17899015.
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    281. Wojtowicz WM, Wu W, Andre I, Qian B, Baker D, Zipursky SL. A vast repertoire of Dscam binding specificities arises from modular interactions of variable Ig domains. Cell. 2007 Sep 21; 130(6):1134-45. PMID: 17889655.
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    282. Baker DA, Madayag A, Kristiansen LV, Meador-Woodruff JH, Haroutunian V, Raju I. Contribution of cystine-glutamate antiporters to the psychotomimetic effects of phencyclidine. Neuropsychopharmacology. 2008 Jun; 33(7):1760-72. PMID: 17728701.
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    283. Das R, Baker D. Automated de novo prediction of native-like RNA tertiary structures. Proc Natl Acad Sci U S A. 2007 Sep 11; 104(37):14664-9. PMID: 17726102.
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    284. Wang C, Bradley P, Baker D. Protein-protein docking with backbone flexibility. J Mol Biol. 2007 Oct 19; 373(2):503-19. PMID: 17825317.
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    285. Mantsch JR, Cullinan WE, Tang LC, Baker DA, Katz ES, Hoks MA, Ziegler DR. Daily cocaine self-administration under long-access conditions augments restraint-induced increases in plasma corticosterone and impairs glucocorticoid receptor-mediated negative feedback in rats. Brain Res. 2007 Sep 05; 1167:101-11. PMID: 17689506.
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    286. Stankunas K, Bayle JH, Havranek JJ, Wandless TJ, Baker D, Crabtree GR, Gestwicki JE. Rescue of degradation-prone mutants of the FK506-rapamycin binding (FRB) protein with chemical ligands. Chembiochem. 2007 Jul 09; 8(10):1162-9. PMID: 17525916.
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    287. Mantsch JR, Baker DA, Serge JP, Hoks MA, Francis DM, Katz ES. Surgical adrenalectomy with diurnal corticosterone replacement slows escalation and prevents the augmentation of cocaine-induced reinstatement in rats self-administering cocaine under long-access conditions. Neuropsychopharmacology. 2008 Mar; 33(4):814-26. PMID: 17534378.
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    288. Fivelman QL, McRobert L, Sharp S, Taylor CJ, Saeed M, Swales CA, Sutherland CJ, Baker DA. Improved synchronous production of Plasmodium falciparum gametocytes in vitro. Mol Biochem Parasitol. 2007 Jul; 154(1):119-23. PMID: 17521751.
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    289. Malmström L, Riffle M, Strauss CE, Chivian D, Davis TN, Bonneau R, Baker D. Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol. 2007 Apr; 5(4):e76. PMID: 17373854.
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    290. Maresz K, Pryce G, Ponomarev ED, Marsicano G, Croxford JL, Shriver LP, Ledent C, Cheng X, Carrier EJ, Mann MK, Giovannoni G, Pertwee RG, Yamamura T, Buckley NE, Hillard CJ, Lutz B, Baker D, Dittel BN. Direct suppression of CNS autoimmune inflammation via the cannabinoid receptor CB1 on neurons and CB2 on autoreactive T cells. Nat Med. 2007 Apr; 13(4):492-7. PMID: 17401376.
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    291. Mantsch JR, Li SJ, Risinger R, Awad S, Katz E, Baker DA, Yang Z. Levo-tetrahydropalmatine attenuates cocaine self-administration and cocaine-induced reinstatement in rats. Psychopharmacology (Berl). 2007 Jul; 192(4):581-91. PMID: 17361394.
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    292. Yatsenko AS, Gray EE, Shcherbata HR, Patterson LB, Sood VD, Kucherenko MM, Baker D, Ruohola-Baker H. A putative Src homology 3 domain binding motif but not the C-terminal dystrophin WW domain binding motif is required for dystroglycan function in cellular polarity in Drosophila. J Biol Chem. 2007 May 18; 282(20):15159-69. PMID: 17355978.
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    293. Watters AL, Deka P, Corrent C, Callender D, Varani G, Sosnick T, Baker D. The highly cooperative folding of small naturally occurring proteins is likely the result of natural selection. Cell. 2007 Feb 09; 128(3):613-24. PMID: 17289578.
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    294. Baker DA. Consequences of herpes simplex virus in pregnancy and their prevention. Curr Opin Infect Dis. 2007 Feb; 20(1):73-6. PMID: 17197885.
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    295. Shcherbata HR, Yatsenko AS, Patterson L, Sood VD, Nudel U, Yaffe D, Baker D, Ruohola-Baker H. Dissecting muscle and neuronal disorders in a Drosophila model of muscular dystrophy. EMBO J. 2007 Jan 24; 26(2):481-93. PMID: 17215867.
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    296. Das R, Qian B, Raman S, Vernon R, Thompson J, Bradley P, Khare S, Tyka MD, Bhat D, Chivian D, Kim DE, Sheffler WH, Malmström L, Wollacott AM, Wang C, Andre I, Baker D. Structure prediction for CASP7 targets using extensive all-atom refinement with Rosetta@home. Proteins. 2007; 69 Suppl 8:118-28. PMID: 17894356.
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    297. Wollacott AM, Zanghellini A, Murphy P, Baker D. Prediction of structures of multidomain proteins from structures of the individual domains. Protein Sci. 2007 Feb; 16(2):165-75. PMID: 17189483.
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    298. Dantas G, Corrent C, Reichow SL, Havranek JJ, Eletr ZM, Isern NG, Kuhlman B, Varani G, Merritt EA, Baker D. High-resolution structural and thermodynamic analysis of extreme stabilization of human procarboxypeptidase by computational protein design. J Mol Biol. 2007 Mar 02; 366(4):1209-21. PMID: 17196978.
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    299. Zanghellini A, Jiang L, Wollacott AM, Cheng G, Meiler J, Althoff EA, Röthlisberger D, Baker D. New algorithms and an in silico benchmark for computational enzyme design. Protein Sci. 2006 Dec; 15(12):2785-94. PMID: 17132862.
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    300. Burfoot D, Whyte R, Tinker D, Howell M, Hall K, Holah J, Smith D, White R, Baker D, McIntosh J. Importance of airborne contamination during dressing of beef and lamb carcasses. J Food Prot. 2006 Dec; 69(12):2828-36. PMID: 17186646.
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    301. Goobes G, Goobes R, Schueler-Furman O, Baker D, Stayton PS, Drobny GP. Folding of the C-terminal bacterial binding domain in statherin upon adsorption onto hydroxyapatite crystals. Proc Natl Acad Sci U S A. 2006 Oct 31; 103(44):16083-8. PMID: 17060618.
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    302. Baker ML, Jiang W, Wedemeyer WJ, Rixon FJ, Baker D, Chiu W. Ab initio modeling of the herpesvirus VP26 core domain assessed by CryoEM density. PLoS Comput Biol. 2006 Oct 27; 2(10):e146. PMID: 17069457.
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    303. Chivian D, Baker D. Homology modeling using parametric alignment ensemble generation with consensus and energy-based model selection. Nucleic Acids Res. 2006; 34(17):e112. PMID: 16971460.
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    304. Dantas G, Watters AL, Lunde BM, Eletr ZM, Isern NG, Roseman T, Lipfert J, Doniach S, Tompa M, Kuhlman B, Stoddard BL, Varani G, Baker D. Mis-translation of a computationally designed protein yields an exceptionally stable homodimer: implications for protein engineering and evolution. J Mol Biol. 2006 Oct 06; 362(5):1004-24. PMID: 16949611.
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    305. Sharp S, Lavstsen T, Fivelman QL, Saeed M, McRobert L, Templeton TJ, Jensen AT, Baker DA, Theander TG, Sutherland CJ. Programmed transcription of the var gene family, but not of stevor, in Plasmodium falciparum gametocytes. Eukaryot Cell. 2006 Aug; 5(8):1206-14. PMID: 16896206.
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    306. Cabranes A, Pryce G, Baker D, Fernández-Ruiz J. Changes in CB1 receptors in motor-related brain structures of chronic relapsing experimental allergic encephalomyelitis mice. Brain Res. 2006 Aug 30; 1107(1):199-205. PMID: 16822488.
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    307. Ashworth J, Havranek JJ, Duarte CM, Sussman D, Monnat RJ, Stoddard BL, Baker D. Computational redesign of endonuclease DNA binding and cleavage specificity. Nature. 2006 Jun 01; 441(7093):656-9. PMID: 16738662.
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    308. Joachimiak LA, Kortemme T, Stoddard BL, Baker D. Computational design of a new hydrogen bond network and at least a 300-fold specificity switch at a protein-protein interface. J Mol Biol. 2006 Aug 04; 361(1):195-208. PMID: 16831445.
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    309. Sprague ER, Wang C, Baker D, Bjorkman PJ. Crystal structure of the HSV-1 Fc receptor bound to Fc reveals a mechanism for antibody bipolar bridging. PLoS Biol. 2006 Jun; 4(6):e148. PMID: 16646632.
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    310. Dobson N, Dantas G, Baker D, Varani G. High-resolution structural validation of the computational redesign of human U1A protein. Structure. 2006 May; 14(5):847-56. PMID: 16698546.
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    311. Zhao T, Podtburg TC, Zhao P, Schmidt BE, Baker DA, Cords B, Doyle MP. Control of Listeria spp. by competitive-exclusion bacteria in floor drains of a poultry processing plant. Appl Environ Microbiol. 2006 May; 72(5):3314-20. PMID: 16672472.
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    312. Yarov-Yarovoy V, Baker D, Catterall WA. Voltage sensor conformations in the open and closed states in ROSETTA structural models of K(+) channels. Proc Natl Acad Sci U S A. 2006 May 09; 103(19):7292-7. PMID: 16648251.
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    313. Kelly JM, McRobert L, Baker DA. Evidence on the chromosomal location of centromeric DNA in Plasmodium falciparum from etoposide-mediated topoisomerase-II cleavage. Proc Natl Acad Sci U S A. 2006 Apr 25; 103(17):6706-11. PMID: 16617116.
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    314. Armstrong JD, Texada MJ, Munjaal R, Baker DA, Beckingham KM. Gravitaxis in Drosophila melanogaster: a forward genetic screen. Genes Brain Behav. 2006 Apr; 5(3):222-39. PMID: 16594976.
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    315. Misura KM, Chivian D, Rohl CA, Kim DE, Baker D. Physically realistic homology models built with ROSETTA can be more accurate than their templates. Proc Natl Acad Sci U S A. 2006 Apr 04; 103(14):5361-6. PMID: 16567638.
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    316. Thompson MJ, Sievers SA, Karanicolas J, Ivanova MI, Baker D, Eisenberg D. The 3D profile method for identifying fibril-forming segments of proteins. Proc Natl Acad Sci U S A. 2006 Mar 14; 103(11):4074-8. PMID: 16537487.
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    317. Sood VD, Baker D. Recapitulation and design of protein binding peptide structures and sequences. J Mol Biol. 2006 Mar 31; 357(3):917-27. PMID: 16473368.
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    318. Ligresti A, Cascio MG, Pryce G, Kulasegram S, Beletskaya I, De Petrocellis L, Saha B, Mahadevan A, Visintin C, Wiley JL, Baker D, Martin BR, Razdan RK, Di Marzo V. New potent and selective inhibitors of anandamide reuptake with antispastic activity in a mouse model of multiple sclerosis. Br J Pharmacol. 2006 Jan; 147(1):83-91. PMID: 16284631.
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    319. Song G, Lazar GA, Kortemme T, Shimaoka M, Desjarlais JR, Baker D, Springer TA. Rational design of intercellular adhesion molecule-1 (ICAM-1) variants for antagonizing integrin lymphocyte function-associated antigen-1-dependent adhesion. J Biol Chem. 2006 Feb 24; 281(8):5042-9. PMID: 16354667.
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    320. Baker DA. Risk factors for herpes simplex virus transmission to pregnant women: a couples study. Am J Obstet Gynecol. 2005 Dec; 193(6):1887-8. PMID: 16325587.
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    321. Baker DA. New management of the pregnant patient to reduce the risk of transmitting herpes to the newborn. Expert Rev Pharmacoecon Outcomes Res. 2005 Dec; 5(6):783-90. PMID: 19807620.
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    322. Schueler-Furman O, Wang C, Bradley P, Misura K, Baker D. Progress in modeling of protein structures and interactions. Science. 2005 Oct 28; 310(5748):638-42. PMID: 16254179.
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    323. Lacy DB, Lin HC, Melnyk RA, Schueler-Furman O, Reither L, Cunningham K, Baker D, Collier RJ. A model of anthrax toxin lethal factor bound to protective antigen. Proc Natl Acad Sci U S A. 2005 Nov 08; 102(45):16409-14. PMID: 16251269.
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    324. Morozov AV, Havranek JJ, Baker D, Siggia ED. Protein-DNA binding specificity predictions with structural models. Nucleic Acids Res. 2005; 33(18):5781-98. PMID: 16246914.
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    325. Cheng G, Qian B, Samudrala R, Baker D. Improvement in protein functional site prediction by distinguishing structural and functional constraints on protein family evolution using computational design. Nucleic Acids Res. 2005; 33(18):5861-7. PMID: 16224101.
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    326. Bradley P, Misura KM, Baker D. Toward high-resolution de novo structure prediction for small proteins. Science. 2005 Sep 16; 309(5742):1868-71. PMID: 16166519.
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    327. Garry DJ, Elimian A, Wiencek V, Baker DA. Commercial laboratory IgM testing for Toxoplasma gondii in pregnancy: a 20-year experience. Infect Dis Obstet Gynecol. 2005 Sep; 13(3):151-3. PMID: 16126500.
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    328. Young JA, Fivelman QL, Blair PL, de la Vega P, Le Roch KG, Zhou Y, Carucci DJ, Baker DA, Winzeler EA. The Plasmodium falciparum sexual development transcriptome: a microarray analysis using ontology-based pattern identification. Mol Biochem Parasitol. 2005 Sep; 143(1):67-79. PMID: 16005087.
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    329. Schueler-Furman O, Wang C, Baker D. Progress in protein-protein docking: atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility. Proteins. 2005 Aug 01; 60(2):187-94. PMID: 15981249.
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    330. de Lago E, Fernández-Ruiz J, Ortega-Gutiérrez S, Cabranes A, Pryce G, Baker D, López-Rodríguez M, Ramos JA. UCM707, an inhibitor of the anandamide uptake, behaves as a symptom control agent in models of Huntington's disease and multiple sclerosis, but fails to delay/arrest the progression of different motor-related disorders. Eur Neuropsychopharmacol. 2006 Jan; 16(1):7-18. PMID: 16006105.
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    331. Baker DA. Antiviral therapy for genital herpes infections in pregnancy. Expert Rev Anti Infect Ther. 2005 Jun; 3(3):385-92. PMID: 15954855.
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    332. Idris AI, van 't Hof RJ, Greig IR, Ridge SA, Baker D, Ross RA, Ralston SH. Regulation of bone mass, bone loss and osteoclast activity by cannabinoid receptors. Nat Med. 2005 Jul; 11(7):774-9. PMID: 15908955.
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    333. Korkegian A, Black ME, Baker D, Stoddard BL. Computational thermostabilization of an enzyme. Science. 2005 May 06; 308(5723):857-60. PMID: 15879217.
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    334. Baker DA, Deng W. Cyclic GMP-dependent protein kinases in protozoa. Front Biosci. 2005 May 01; 10:1229-38. PMID: 15769621.
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    335. Meiler J, Baker D. The fumarate sensor DcuS: progress in rapid protein fold elucidation by combining protein structure prediction methods with NMR spectroscopy. J Magn Reson. 2005 Apr; 173(2):310-6. PMID: 15780923.
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    336. Wang C, Schueler-Furman O, Baker D. Improved side-chain modeling for protein-protein docking. Protein Sci. 2005 May; 14(5):1328-39. PMID: 15802647.
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    337. Jiang L, Kuhlman B, Kortemme T, Baker D. A "solvated rotamer" approach to modeling water-mediated hydrogen bonds at protein-protein interfaces. Proteins. 2005 Mar 01; 58(4):893-904. PMID: 15651050.
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    338. Saunders CT, Baker D. Recapitulation of protein family divergence using flexible backbone protein design. J Mol Biol. 2005 Feb 18; 346(2):631-44. PMID: 15670610.
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    339. Chivian D, Kim DE, Malmström L, Schonbrun J, Rohl CA, Baker D. Prediction of CASP6 structures using automated Robetta protocols. Proteins. 2005; 61 Suppl 7:157-66. PMID: 16187358.
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    340. Bradley P, Malmström L, Qian B, Schonbrun J, Chivian D, Kim DE, Meiler J, Misura KM, Baker D. Free modeling with Rosetta in CASP6. Proteins. 2005; 61 Suppl 7:128-34. PMID: 16187354.
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    341. Kim DE, Chivian D, Malmström L, Baker D. Automated prediction of domain boundaries in CASP6 targets using Ginzu and RosettaDOM. Proteins. 2005; 61 Suppl 7:193-200. PMID: 16187362.
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    342. Baker D, Brown Z, Hollier LM, Wendel GD, Hulme L, Griffiths DA, Mauskopf J. Cost-effectiveness of herpes simplex virus type 2 serologic testing and antiviral therapy in pregnancy. Am J Obstet Gynecol. 2004 Dec; 191(6):2074-84. PMID: 15592294.
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    343. Bradford L, Baker D, Ries MD, Pruitt LA. Fatigue crack propagation resistance of highly crosslinked polyethylene. Clin Orthop Relat Res. 2004 Dec; (429):68-72. PMID: 15577468.
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    344. Havranek JJ, Duarte CM, Baker D. A simple physical model for the prediction and design of protein-DNA interactions. J Mol Biol. 2004 Nov 12; 344(1):59-70. PMID: 15504402.
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    345. Jackson SJ, Baker D, Cuzner ML, Diemel LT. Cannabinoid-mediated neuroprotection following interferon-gamma treatment in a three-dimensional mouse brain aggregate cell culture. Eur J Neurosci. 2004 Nov; 20(9):2267-75. PMID: 15525268.
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    346. Qian B, Ortiz AR, Baker D. Improvement of comparative model accuracy by free-energy optimization along principal components of natural structural variation. Proc Natl Acad Sci U S A. 2004 Oct 26; 101(43):15346-51. PMID: 15492216.
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    347. Chen Y, Kortemme T, Robertson T, Baker D, Varani G. A new hydrogen-bonding potential for the design of protein-RNA interactions predicts specific contacts and discriminates decoys. Nucleic Acids Res. 2004; 32(17):5147-62. PMID: 15459285.
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    348. Misura KM, Morozov AV, Baker D. Analysis of anisotropic side-chain packing in proteins and application to high-resolution structure prediction. J Mol Biol. 2004 Sep 10; 342(2):651-64. PMID: 15327962.
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    349. Baker DA. Adenylyl and guanylyl cyclases from the malaria parasite Plasmodium falciparum. IUBMB Life. 2004 Sep; 56(9):535-40. PMID: 15590559.
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    350. Kim DE, Chivian D, Baker D. Protein structure prediction and analysis using the Robetta server. Nucleic Acids Res. 2004 Jul 01; 32(Web Server issue):W526-31. PMID: 15215442.
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    351. Hitti J, Frenkel LM, Stek AM, Nachman SA, Baker D, Gonzalez-Garcia A, Provisor A, Thorpe EM, Paul ME, Foca M, Gandia J, Huang S, Wei LJ, Stevens LM, Watts DH, McNamara J. Maternal toxicity with continuous nevirapine in pregnancy: results from PACTG 1022. J Acquir Immune Defic Syndr. 2004 Jul 01; 36(3):772-6. PMID: 15213559.
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    352. Baker DA, Kelly JM. Structure, function and evolution of microbial adenylyl and guanylyl cyclases. Mol Microbiol. 2004 Jun; 52(5):1229-42. PMID: 15165228.
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    353. Bradford L, Baker DA, Graham J, Chawan A, Ries MD, Pruitt LA. Wear and surface cracking in early retrieved highly cross-linked polyethylene acetabular liners. J Bone Joint Surg Am. 2004 Jun; 86(6):1271-82. PMID: 15173302.
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    354. Schlosshauer M, Baker D. Realistic protein-protein association rates from a simple diffusional model neglecting long-range interactions, free energy barriers, and landscape ruggedness. Protein Sci. 2004 Jun; 13(6):1660-9. PMID: 15133165.
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    355. Baker DA, Kelly JM. Purine nucleotide cyclases in the malaria parasite. Trends Parasitol. 2004 May; 20(5):227-32. PMID: 15105023.
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    356. Watters AL, Baker D. Searching for folded proteins in vitro and in silico. Eur J Biochem. 2004 May; 271(9):1615-22. PMID: 15096200.
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    357. Scalley-Kim M, Baker D. Characterization of the folding energy landscapes of computer generated proteins suggests high folding free energy barriers and cooperativity may be consequences of natural selection. J Mol Biol. 2004 Apr 30; 338(3):573-83. PMID: 15081814.
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    358. Morozov AV, Kortemme T, Tsemekhman K, Baker D. Close agreement between the orientation dependence of hydrogen bonds observed in protein structures and quantum mechanical calculations. Proc Natl Acad Sci U S A. 2004 May 04; 101(18):6946-51. PMID: 15118103.
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    359. Kortemme T, Joachimiak LA, Bullock AN, Schuler AD, Stoddard BL, Baker D. Computational redesign of protein-protein interaction specificity. Nat Struct Mol Biol. 2004 Apr; 11(4):371-9. PMID: 15034550.
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    360. Svensson HG, Wedemeyer WJ, Ekstrom JL, Callender DR, Kortemme T, Kim DE, Sjöbring U, Baker D. Contributions of amino acid side chains to the kinetics and thermodynamics of the bivalent binding of protein L to Ig kappa light chain. Biochemistry. 2004 Mar 09; 43(9):2445-57. PMID: 14992582.
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    361. Kortemme T, Baker D. Computational design of protein-protein interactions. Curr Opin Chem Biol. 2004 Feb; 8(1):91-7. PMID: 15036162.
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    362. de Lago E, Ligresti A, Ortar G, Morera E, Cabranes A, Pryce G, Bifulco M, Baker D, Fernandez-Ruiz J, Di Marzo V. In vivo pharmacological actions of two novel inhibitors of anandamide cellular uptake. Eur J Pharmacol. 2004 Jan 26; 484(2-3):249-57. PMID: 14744610.
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    363. Rohl CA, Strauss CE, Misura KM, Baker D. Protein structure prediction using Rosetta. Methods Enzymol. 2004; 383:66-93. PMID: 15063647.
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    364. Meiler J, Baker D. Rapid protein fold determination using unassigned NMR data. Proc Natl Acad Sci U S A. 2003 Dec 23; 100(26):15404-9. PMID: 14668443.
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    365. Xi ZX, Shen H, Baker DA, Kalivas PW. Inhibition of non-vesicular glutamate release by group III metabotropic glutamate receptors in the nucleus accumbens. J Neurochem. 2003 Dec; 87(5):1204-12. PMID: 14622100.
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    366. Hazbun TR, Malmström L, Anderson S, Graczyk BJ, Fox B, Riffle M, Sundin BA, Aranda JD, McDonald WH, Chiu CH, Snydsman BE, Bradley P, Muller EG, Fields S, Baker D, Yates JR, Davis TN. Assigning function to yeast proteins by integration of technologies. Mol Cell. 2003 Dec; 12(6):1353-65. PMID: 14690591.
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    367. Kuhlman B, Dantas G, Ireton GC, Varani G, Stoddard BL, Baker D. Design of a novel globular protein fold with atomic-level accuracy. Science. 2003 Nov 21; 302(5649):1364-8. PMID: 14631033.
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    368. Kalivas PW, McFarland K, Bowers S, Szumlinski K, Xi ZX, Baker D. Glutamate transmission and addiction to cocaine. Ann N Y Acad Sci. 2003 Nov; 1003:169-75. PMID: 14684444.
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    369. Baker DA, McFarland K, Lake RW, Shen H, Toda S, Kalivas PW. N-acetyl cysteine-induced blockade of cocaine-induced reinstatement. Ann N Y Acad Sci. 2003 Nov; 1003:349-51. PMID: 14684458.
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    370. Moran MM, Melendez R, Baker D, Kalivas PW, Seamans JK. Cystine/glutamate antiporter regulation of vesicular glutamate release. Ann N Y Acad Sci. 2003 Nov; 1003:445-7. PMID: 14684484.
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    371. Meiler J, Baker D. Coupled prediction of protein secondary and tertiary structure. Proc Natl Acad Sci U S A. 2003 Oct 14; 100(21):12105-10. PMID: 14528006.
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    372. Sadreyev RI, Baker D, Grishin NV. Profile-profile comparisons by COMPASS predict intricate homologies between protein families. Protein Sci. 2003 Oct; 12(10):2262-72. PMID: 14500884.
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    373. Dantas G, Kuhlman B, Callender D, Wong M, Baker D. A large scale test of computational protein design: folding and stability of nine completely redesigned globular proteins. J Mol Biol. 2003 Sep 12; 332(2):449-60. PMID: 12948494.
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    374. Deng W, Parbhu-Patel A, Meyer DJ, Baker DA. The role of two novel regulatory sites in the activation of the cGMP-dependent protein kinase from Plasmodium falciparum. Biochem J. 2003 Sep 01; 374(Pt 2):559-65. PMID: 12817987.
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    375. Kinch LN, Baker D, Grishin NV. Deciphering a novel thioredoxin-like fold family. Proteins. 2003 Aug 15; 52(3):323-31. PMID: 12866046.
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    376. Schueler-Furman O, Baker D. Conserved residue clustering and protein structure prediction. Proteins. 2003 Aug 01; 52(2):225-35. PMID: 12833546.
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    377. Gray JJ, Moughon S, Wang C, Schueler-Furman O, Kuhlman B, Rohl CA, Baker D. Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations. J Mol Biol. 2003 Aug 01; 331(1):281-99. PMID: 12875852.
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    378. Baker DA, Bellare A, Pruitt L. The effects of degree of crosslinking on the fatigue crack initiation and propagation resistance of orthopedic-grade polyethylene. J Biomed Mater Res A. 2003 Jul 01; 66(1):146-54. PMID: 12833441.
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    379. Gray JJ, Moughon SE, Kortemme T, Schueler-Furman O, Misura KM, Morozov AV, Baker D. Protein-protein docking predictions for the CAPRI experiment. Proteins. 2003 Jul 01; 52(1):118-22. PMID: 12784377.
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    380. Baker DA, McFarland K, Lake RW, Shen H, Tang XC, Toda S, Kalivas PW. Neuroadaptations in cystine-glutamate exchange underlie cocaine relapse. Nat Neurosci. 2003 Jul; 6(7):743-9. PMID: 12778052.
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    381. Yi Q, Rajagopal P, Klevit RE, Baker D. Structural and kinetic characterization of the simplified SH3 domain FP1. Protein Sci. 2003 Apr; 12(4):776-83. PMID: 12649436.
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    382. McFarland BJ, Kortemme T, Yu SF, Baker D, Strong RK. Symmetry recognizing asymmetry: analysis of the interactions between the C-type lectin-like immunoreceptor NKG2D and MHC class I-like ligands. Structure. 2003 Apr; 11(4):411-22. PMID: 12679019.
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    383. Muhia DK, Swales CA, Eckstein-Ludwig U, Saran S, Polley SD, Kelly JM, Schaap P, Krishna S, Baker DA. Multiple splice variants encode a novel adenylyl cyclase of possible plastid origin expressed in the sexual stage of the malaria parasite Plasmodium falciparum. J Biol Chem. 2003 Jun 13; 278(24):22014-22. PMID: 12668669.
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    384. Baker D, Eisen D. Valacyclovir for prevention of recurrent herpes labialis: 2 double-blind, placebo-controlled studies. Cutis. 2003 Mar; 71(3):239-42. PMID: 12661753.
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    385. Kortemme T, Morozov AV, Baker D. An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes. J Mol Biol. 2003 Feb 28; 326(4):1239-59. PMID: 12589766.
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    386. Kalivas PW, Toda S, Bowers MS, Baker DA, Ghasemzadeh MB. The temporal sequence of changes in gene expression by drugs of abuse. Methods Mol Med. 2003; 79:3-11. PMID: 12506686.
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    387. Nauli S, Kuhlman B, Le Trong I, Stenkamp RE, Teller D, Baker D. Crystal structures and increased stabilization of the protein G variants with switched folding pathways NuG1 and NuG2. Protein Sci. 2002 Dec; 11(12):2924-31. PMID: 12441390.
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    388. Xi ZX, Ramamoorthy S, Baker DA, Shen H, Samuvel DJ, Kalivas PW. Modulation of group II metabotropic glutamate receptor signaling by chronic cocaine. J Pharmacol Exp Ther. 2002 Nov; 303(2):608-15. PMID: 12388642.
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    389. Kortemme T, Baker D. A simple physical model for binding energy hot spots in protein-protein complexes. Proc Natl Acad Sci U S A. 2002 Oct 29; 99(22):14116-21. PMID: 12381794.
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    390. Baker DA, Xi ZX, Shen H, Swanson CJ, Kalivas PW. The origin and neuronal function of in vivo nonsynaptic glutamate. J Neurosci. 2002 Oct 15; 22(20):9134-41. PMID: 12388621.
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    391. Tyring SK, Baker D, Snowden W. Valacyclovir for herpes simplex virus infection: long-term safety and sustained efficacy after 20 years' experience with acyclovir. J Infect Dis. 2002 Oct 15; 186 Suppl 1:S40-6. PMID: 12353186.
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    392. Chevalier BS, Kortemme T, Chadsey MS, Baker D, Monnat RJ, Stoddard BL. Design, activity, and structure of a highly specific artificial endonuclease. Mol Cell. 2002 Oct; 10(4):895-905. PMID: 12419232.
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    393. Bonneau R, Strauss CE, Rohl CA, Chivian D, Bradley P, Malmström L, Robertson T, Baker D. De novo prediction of three-dimensional structures for major protein families. J Mol Biol. 2002 Sep 06; 322(1):65-78. PMID: 12215415.
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    394. Bonneau R, Ruczinski I, Tsai J, Baker D. Contact order and ab initio protein structure prediction. Protein Sci. 2002 Aug; 11(8):1937-44. PMID: 12142448.
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    395. Deng W, Baker DA. A novel cyclic GMP-dependent protein kinase is expressed in the ring stage of the Plasmodium falciparum life cycle. Mol Microbiol. 2002 Jun; 44(5):1141-51. PMID: 12068803.
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    396. Wilson R, Goyal L, Ditzel M, Zachariou A, Baker DA, Agapite J, Steller H, Meier P. The DIAP1 RING finger mediates ubiquitination of Dronc and is indispensable for regulating apoptosis. Nat Cell Biol. 2002 Jun; 4(6):445-50. PMID: 12021771.
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    397. Schonbrun J, Wedemeyer WJ, Baker D. Protein structure prediction in 2002. Curr Opin Struct Biol. 2002 Jun; 12(3):348-54. PMID: 12127454.
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    398. Baker D. Progress in AB Initio Protein Structure Prediction. ScientificWorldJournal. 2002; 2:31. PMID: 29973789.
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    399. Baker DA. Issues and management of herpes in pregnancy. Int J Fertil Womens Med. 2002 May-Jun; 47(3):129-35. PMID: 12081258.
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    400. London RM, Roberts FA, Baker DA, Rohrer MD, O'Neal RB. Histologic comparison of a thermal dual-etched implant surface to machined, TPS, and HA surfaces: bone contact in vivo in rabbits. Int J Oral Maxillofac Implants. 2002 May-Jun; 17(3):369-76. PMID: 12074452.
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    401. Brooks JW, Pryce G, Bisogno T, Jaggar SI, Hankey DJ, Brown P, Bridges D, Ledent C, Bifulco M, Rice AS, Di Marzo V, Baker D. Arvanil-induced inhibition of spasticity and persistent pain: evidence for therapeutic sites of action different from the vanilloid VR1 receptor and cannabinoid CB(1)/CB(2) receptors. Eur J Pharmacol. 2002 Mar 29; 439(1-3):83-92. PMID: 11937096.
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    402. Kuhlman B, O'Neill JW, Kim DE, Zhang KY, Baker D. Accurate computer-based design of a new backbone conformation in the second turn of protein L. J Mol Biol. 2002 Jan 18; 315(3):471-7. PMID: 11786026.
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    403. Baker DA, Shen H, Kalivas PW. Cystine/glutamate exchange serves as the source for extracellular glutamate: modifications by repeated cocaine administration. Amino Acids. 2002; 23(1-3):161-2. PMID: 12373531.
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    404. Morris-Downes MM, McCormack K, Baker D, Sivaprasad D, Natkunarajah J, Amor S. Encephalitogenic and immunogenic potential of myelin-associated glycoprotein (MAG), oligodendrocyte-specific glycoprotein (OSP) and 2',3'-cyclic nucleotide 3'-phosphodiesterase (CNPase) in ABH and SJL mice. J Neuroimmunol. 2002 Jan; 122(1-2):20-33. PMID: 11777540.
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    405. Baker DA. Valacyclovir in the treatment of genital herpes and herpes zoster. Expert Opin Pharmacother. 2002 Jan; 3(1):51-8. PMID: 11772333.
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    406. Xi ZX, Baker DA, Shen H, Carson DS, Kalivas PW. Group II metabotropic glutamate receptors modulate extracellular glutamate in the nucleus accumbens. J Pharmacol Exp Ther. 2002 Jan; 300(1):162-71. PMID: 11752112.
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    407. Swanson CJ, Baker DA, Carson D, Worley PF, Kalivas PW. Repeated cocaine administration attenuates group I metabotropic glutamate receptor-mediated glutamate release and behavioral activation: a potential role for Homer. J Neurosci. 2001 Nov 15; 21(22):9043-52. PMID: 11698615.
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    408. Muhia DK, Swales CA, Deng W, Kelly JM, Baker DA. The gametocyte-activating factor xanthurenic acid stimulates an increase in membrane-associated guanylyl cyclase activity in the human malaria parasite Plasmodium falciparum. Mol Microbiol. 2001 Oct; 42(2):553-60. PMID: 11703675.
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    409. Baker DA, Mille-Baker B, Wainwright SM, Ish-Horowicz D, Dibb NJ. Mae mediates MAP kinase phosphorylation of Ets transcription factors in Drosophila. Nature. 2001 May 17; 411(6835):330-4. PMID: 11357138.
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    410. Li JL, Targett GA, Baker DA. Primary structure and sexual stage-specific expression of a LAMMER protein kinase of Plasmodium falciparum. Int J Parasitol. 2001 Apr; 31(4):387-92. PMID: 11306117.
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    411. Baker DA, Tran-Nguyen TL, Fuchs RA, Neisewander JL. Influence of individual differences and chronic fluoxetine treatment on cocaine-seeking behavior in rats. Psychopharmacology (Berl). 2001 Apr; 155(1):18-26. PMID: 11374332.
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    412. Carucci DJ, Witney AA, Muhia DK, Warhurst DC, Schaap P, Meima M, Li JL, Taylor MC, Kelly JM, Baker DA. Guanylyl cyclase activity associated with putative bifunctional integral membrane proteins in Plasmodium falciparum. J Biol Chem. 2000 Jul 21; 275(29):22147-56. PMID: 10747978.
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    413. Li JL, Baker DA, Cox LS. Sexual stage-specific expression of a third calcium-dependent protein kinase from Plasmodium falciparum. Biochim Biophys Acta. 2000 Apr 25; 1491(1-3):341-9. PMID: 10760601.
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    414. Neisewander JL, Baker DA, Fuchs RA, Tran-Nguyen LT, Palmer A, Marshall JF. Fos protein expression and cocaine-seeking behavior in rats after exposure to a cocaine self-administration environment. J Neurosci. 2000 Jan 15; 20(2):798-805. PMID: 10632609.
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    415. Taylor MC, Muhia DK, Baker DA, Mondragon A, Schaap PB, Kelly JM. Trypanosoma cruzi adenylyl cyclase is encoded by a complex multigene family. Mol Biochem Parasitol. 1999 Nov 30; 104(2):205-17. PMID: 10593176.
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    416. Pollack VA, Savage DM, Baker DA, Tsaparikos KE, Sloan DE, Moyer JD, Barbacci EG, Pustilnik LR, Smolarek TA, Davis JA, Vaidya MP, Arnold LD, Doty JL, Iwata KK, Morin MJ. Inhibition of epidermal growth factor receptor-associated tyrosine phosphorylation in human carcinomas with CP-358,774: dynamics of receptor inhibition in situ and antitumor effects in athymic mice. J Pharmacol Exp Ther. 1999 Nov; 291(2):739-48. PMID: 10525095.
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    417. Baker DA, Hastings RS, Pruitt L. Study of fatigue resistance of chemical and radiation crosslinked medical grade ultrahigh molecular weight polyethylene. J Biomed Mater Res. 1999 Sep 15; 46(4):573-81. PMID: 10398019.
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    418. Baker DA. The use of antiviral medications in the treatment of herpes simplex virus infections of women. Int J Fertil Womens Med. 1999 Sep-Oct; 44(5):227-33. PMID: 10569451.
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    419. Tran-Nguyen LT, Baker DA, Grote KA, Solano J, Neisewander JL. Serotonin depletion attenuates cocaine-seeking behavior in rats. Psychopharmacology (Berl). 1999 Sep 01; 146(1):60-6. PMID: 10485965.
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    420. Baker DA, Blythe JG, Miller JM. Once-daily valacyclovir hydrochloride for suppression of recurrent genital herpes. Obstet Gynecol. 1999 Jul; 94(1):103-6. PMID: 10389727.
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    421. Baker DA, Fuchs RA, Tran-Nguyen LT, Palmer AJ, Marshall JF, McPherson RJ, Neisewander JL. Cocaine-seeking behavior and Fos expression in the amygdala produced by cocaine or a cocaine self-administration environment. Ann N Y Acad Sci. 1999 Jun 29; 877:796-9. PMID: 10415707.
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    422. Akimoto K, Becker W, Persson R, Baker DA, Rohrer MD, O'Neal RB. Evaluation of titanium implants placed into simulated extraction sockets: a study in dogs. Int J Oral Maxillofac Implants. 1999 May-Jun; 14(3):351-60. PMID: 10379108.
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    423. Baker DA, Fuchs RA, Specio SE, Khroyan TV, Neisewander JL. Effects of intraaccumbens administration of SCH-23390 on cocaine-induced locomotion and conditioned place preference. Synapse. 1998 Oct; 30(2):181-93. PMID: 9723788.
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    424. Khroyan TV, Baker DA, Fuchs RA, Manders N, Neisewander JL. Differential effects of 7-OH-DPAT on amphetamine-induced stereotypy and conditioned place preference. Psychopharmacology (Berl). 1998 Oct; 139(4):332-41. PMID: 9809854.
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    425. Li JL, Baker DA. A putative protein serine/threonine phosphatase from Plasmodium falciparum contains a large N-terminal extension and five unique inserts in the catalytic domain. Mol Biochem Parasitol. 1998 Sep 15; 95(2):287-95. PMID: 9803420.
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    426. Baker DA. Antiviral therapy for genital herpes in nonpregnant and pregnant women. Int J Fertil Womens Med. 1998 Sep-Oct; 43(5):243-8. PMID: 9863617.
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    427. Baker DA, Specio SE, Tran-Nguyen LT, Neisewander JL. Amphetamine infused into the ventrolateral striatum produces oral stereotypies and conditioned place preference. Pharmacol Biochem Behav. 1998 Sep; 61(1):107-11. PMID: 9715812.
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    428. Tran-Nguyen LT, Fuchs RA, Coffey GP, Baker DA, O'Dell LE, Neisewander JL. Time-dependent changes in cocaine-seeking behavior and extracellular dopamine levels in the amygdala during cocaine withdrawal. Neuropsychopharmacology. 1998 Jul; 19(1):48-59. PMID: 9608576.
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    429. Li JL, Baker DA. Protein phosphatase beta, a putative type-2A protein phosphatase from the human malaria parasite Plasmodium falciparum. Eur J Biochem. 1997 Oct 01; 249(1):98-106. PMID: 9363759.
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    430. Baker DA. Diagnosis and treatment of viral STDs in women. Int J Fertil Womens Med. 1997 Mar-Apr; 42(2):107-14. PMID: 9160221.
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    431. Johnson ER, Baker DA. Use of linear measurements of m. longissimus to predict the muscle content of beef carcasses. Meat Sci. 1997 Mar; 45(3):321-7. PMID: 22061470.
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    432. Khroyan TV, Fuchs RA, Baker DA, Neisewander JL. Effects of D3-preferring agonists 7-OH-PIPAT and PD-128,907 on motor behaviors and place conditioning. Behav Pharmacol. 1997 Feb; 8(1):65-74. PMID: 9833002.
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    433. Li JL, Robson KJ, Chen JL, Targett GA, Baker DA. Pfmrk, a MO15-related protein kinase from Plasmodium falciparum. Gene cloning, sequence, stage-specific expression and chromosome localization. Eur J Biochem. 1996 Nov 01; 241(3):805-13. PMID: 8944769.
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    434. Drakeley CJ, Duraisingh MT, Póvoa M, Conway DJ, Targett GA, Baker DA. Geographical distribution of a variant epitope of Pfs48/45, a Plasmodium falciparum transmission-blocking vaccine candidate. Mol Biochem Parasitol. 1996 Oct 30; 81(2):253-7. PMID: 8898341.
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    435. Baker DA, Khroyan TV, O'Dell LE, Fuchs RA, Neisewander JL. Differential effects of intra-accumbens sulpiride on cocaine-induced locomotion and conditioned place preference. J Pharmacol Exp Ther. 1996 Oct; 279(1):392-401. PMID: 8859018.
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    436. Baker DA, Drakeley CJ, Ong CS, Lulat AG, Greenwood BM, Targett GA. Humoral immune responses in Gambians to Pfs16, an immunodominant, Plasmodium falciparum integral membrane protein. Parasite Immunol. 1996 Oct; 18(10):527-33. PMID: 9226690.
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    437. Latta RA, Baker DA. Treatment of recurrent eczema herpeticum in pregnancy with acyclovir. Infect Dis Obstet Gynecol. 1996; 4(4):239-42. PMID: 18476099.
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    438. Khroyan TV, Baker DA, Neisewander JL. Dose-dependent effects of the D3-preferring agonist 7-OH-DPAT on motor behaviors and place conditioning. Psychopharmacology (Berl). 1995 Dec; 122(4):351-7. PMID: 8657832.
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    439. Maher J, Baker DA, Manning M, Dibb NJ, Roberts IA. Evidence for cell-specific differences in transformation by N-, H- and K-ras. Oncogene. 1995 Oct 19; 11(8):1639-47. PMID: 7478589.
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    440. Glover HR, Baker DA, Celetti A, Dibb NJ. Selection of activating mutations of c-fms in FDC-P1 cells. Oncogene. 1995 Oct 05; 11(7):1347-56. PMID: 7478556.
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    441. Baker DA, Thompson J, Daramola OO, Carlton JM, Targett GA. Sexual-stage-specific RNA expression of a new Plasmodium falciparum gene detected by in situ hybridisation. Mol Biochem Parasitol. 1995 Jun; 72(1-2):193-201. PMID: 8538689.
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    442. Brissette WH, Baker DA, Stam EJ, Umland JP, Griffiths RJ. GM-CSF rapidly primes mice for enhanced cytokine production in response to LPS and TNF. Cytokine. 1995 Apr; 7(3):291-5. PMID: 7640348.
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    443. Baker DA, Maher J, Roberts IA, Dibb NJ. Evidence that ras and myc mediate the synergy between SCF or M-CSF and other haemopoietic growth factors. Leukemia. 1994 Nov; 8(11):1970-81. PMID: 7526094.
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    444. Baker DA. Management of the female HIV-infected patient. AIDS Res Hum Retroviruses. 1994 Aug; 10(8):935-8. PMID: 7811546.
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    445. Baker DA, Daramola O, McCrossan MV, Harmer J, Targett GA. Subcellular localization of Pfs16, a Plasmodium falciparum gametocyte antigen. Parasitology. 1994 Feb; 108 ( Pt 2):129-37. PMID: 8159458.
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    446. Baker DA. Long-term suppressive therapy with acyclovir for recurrent genital herpes. J Int Med Res. 1994; 22 Suppl 1:24A-31A; discussion 31A-32A. PMID: 8063021.
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    447. Baker DA, Glover HR, Dibb NJ. Synergy between SCF or M-CSF with IL-3 or GM-CSF in FDC-P1 cells: a sensitive assay of transforming mutations of c-fms. Leukemia. 1994 Jan; 8(1):141-50. PMID: 7507191.
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    448. Babcock AM, Baker DA, Lovec R. Locomotor activity in the ischemic gerbil. Brain Res. 1993 Oct 22; 625(2):351-4. PMID: 8275320.
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    449. Ekong RM, Robson KJ, Baker DA, Warhurst DC. Transcripts of the multidrug resistance genes in chloroquine-sensitive and chloroquine-resistant Plasmodium falciparum. Parasitology. 1993 Feb; 106 ( Pt 2):107-15. PMID: 8446468.
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    450. Babcock AM, Baker DA, Moody TW. Bombesin-induced hypothermia: a dose-response and receptor antagonist study. Pharmacol Biochem Behav. 1992 Nov; 43(3):957-60. PMID: 1333086.
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    451. Baker DA. Herpes simplex virus infections. Curr Opin Obstet Gynecol. 1992 Oct; 4(5):676-81. PMID: 1327252.
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    452. Petrikovsky BM, Shmoys SM, Baker DA, Monheit AG. Pleural effusion in aneuploidy. Am J Perinatol. 1991 May; 8(3):214-6. PMID: 1827583.
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    453. Yaegashi N, Jenison SA, Valentine JM, Dunn M, Taichman LB, Baker DA, Galloway DA. Characterization of murine polyclonal antisera and monoclonal antibodies generated against intact and denatured human papillomavirus type 1 virions. J Virol. 1991 Mar; 65(3):1578-83. PMID: 1847474.
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    454. Baker DA, Douglas JM, Buntin DM, Micha JP, Beutner KR, Patsner B. Topical podofilox for the treatment of condylomata acuminata in women. Obstet Gynecol. 1990 Oct; 76(4):656-9. PMID: 2216198.
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    455. Baker DA, Genigeqrgis C, Garcia G. Prevalence of Clostridium botulinum in Seafood and Significance of Multiple Incubation Temperatures for Determination of Its Presence and Type in Fresh Retail Fish. J Food Prot. 1990 Aug; 53(8):668-673. PMID: 31018337.
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    456. Shmoys SM, Sivkin M, Dery C, Monheit AG, Baker DA. Amniotic fluid index: an appropriate predictor of perinatal outcome. Am J Perinatol. 1990 Jul; 7(3):266-9. PMID: 2372334.
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    457. Bruce MC, Baker DA, Alano P, Rogers NC, Graves PM, Targett GA, Carter R. Sequence coding for a sexual stage specific protein of Plasmodium falciparum. Nucleic Acids Res. 1990 Jun 25; 18(12):3637. PMID: 2129551.
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    458. Baker DA. Herpes and pregnancy: new management. Clin Obstet Gynecol. 1990 Jun; 33(2):253-7. PMID: 2190730.
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    459. Patsner B, Baker DA, Orr JW. Human papillomavirus genital tract infections during pregnancy. Clin Obstet Gynecol. 1990 Jun; 33(2):258-67. PMID: 2161719.
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    460. Baker DA, Genigeorgis C, Glover J, Razavilar V. Growth and toxigenesis of C. botulinum type E in fishes packaged under modified atmospheres. Int J Food Microbiol. 1990 May; 10(3-4):269-89. PMID: 2204405.
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    461. Baker DA, Genigeorgis C. Predicting the Safe Storage of Fresh Fish Under Modified Atmospheres with Respect to Clostridium botulinum Toxigenesis by Modeling Length of the Lag Phase of Growth. J Food Prot. 1990 Feb; 53(2):131-140. PMID: 31003377.
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    462. Baker DA, Pavan-Langston D, Gonik B, Milch PO, Dunkel EC, Berkowitz A, Woodin MB, Philip A, Vander-Mallie RJ, Bobrow MN, et al. Multicenter clinical evaluation of the Du Pont Herpchek HSV ELISA, a new rapid diagnostic test for the direct detection of herpes simplex virus. Adv Exp Med Biol. 1990; 263:71-6. PMID: 2162132.
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    463. Baker DA, Gonik B, Milch PO, Berkowitz A, Lipson S, Verma U. Clinical evaluation of a new herpes simplex virus ELISA: a rapid diagnostic test for herpes simplex virus. Obstet Gynecol. 1989 Mar; 73(3 Pt 1):322-5. PMID: 2536910.
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    464. Brown ZA, Baker DA. Acyclovir therapy during pregnancy. Obstet Gynecol. 1989 Mar; 73(3 Pt 2):526-31. PMID: 2644603.
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    465. Baker DA, Blythe JG, Kaufman R, Hale R, Portnoy J. One-year suppression of frequent recurrences of genital herpes with oral acyclovir. Obstet Gynecol. 1989 Jan; 73(1):84-7. PMID: 2642329.
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    466. Baker DA, Salvatore W, Milch PO. Effect of low-dose oral contraceptives on natural killer cell activity. Contraception. 1989 Jan; 39(1):119-24. PMID: 2910646.
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    467. Holberton D, Baker DA, Marshall J. Segmented alpha-helical coiled-coil structure of the protein giardin from the Giardia cytoskeleton. J Mol Biol. 1988 Dec 05; 204(3):789-95. PMID: 3225852.
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    468. Milch PO, Salvatore W, Luft B, Baker DA. Suppression of newborn natural killer cell activity by prostaglandin E2. Am J Obstet Gynecol. 1988 Oct; 159(4):895-6. PMID: 3177543.
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    469. Baker DA, Holberton DV, Marshall J. Sequence of a giardin subunit cDNA from Giardia lamblia. Nucleic Acids Res. 1988 Jul 25; 16(14B):7177. PMID: 3405761.
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    470. Baker DA, Milch PO, Salvatore W, Luft B. Enhancement of maternal and neonatal natural killer cell activity with interleukin-2. Am J Obstet Gynecol. 1987 Sep; 157(3):780-1. PMID: 3498365.
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    471. Baker DA, Hameed C, Tejani N, Thomas J, Dattwyler R. Lymphocyte subsets in the neonates of preeclamptic mothers. Am J Reprod Immunol Microbiol. 1987 Aug; 14(4):107-9. PMID: 2963550.
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    472. Best JM, Welch JM, Baker DA, Banatvala JE. Maternal rubella at St Thomas' Hospital in 1978 and 1986: support for augmenting the rubella vaccination programme. Lancet. 1987 Jul 11; 2(8550):88-90. PMID: 2885582.
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    473. Rochelson BL, Trunca C, Monheit AG, Baker DA. The use of a rapid in situ technique for third-trimester diagnosis of trisomy 18. Am J Obstet Gynecol. 1986 Oct; 155(4):835-6. PMID: 3766638.
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    474. Milch PO, Monheit AG, Rochelson BL, Metz G, Baker DA. Failure of ibuprofen in treatment of herpes genitalis. Am J Obstet Gynecol. 1986 Aug; 155(2):399-400. PMID: 3526900.
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    475. Baker DA, Milch PO. Acyclovir for genital herpes simplex virus infections. A review. J Reprod Med. 1986 May; 31(5 Suppl):433-8. PMID: 3522895.
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    476. Baker DA, Bienstock J, Metz G, Rochelson BL, Monheit AG. Serologic screening of pregnant women at high risk for transmitting hepatitis B to their newborn. Bull N Y Acad Med. 1986 Apr; 62(3):282-6. PMID: 3458509.
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    477. Baker DA, Thomas J. The effect of prostaglandin E2 on the initial immune response to herpes simplex virus infection. Am J Obstet Gynecol. 1985 Mar 01; 151(5):586-90. PMID: 3872073.
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    478. Baker DA, Smitherman RO. Immune response of Tilapia aurea exposed to Salmonella typhimurium. Appl Environ Microbiol. 1983 Jul; 46(1):28-31. PMID: 6351746.
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    479. Baker DA, Smitherman RO, McCaskey TA. Longevity of Salmonella typhimurium in Tilapia aurea and water from pools fertilized with swine waste. Appl Environ Microbiol. 1983 May; 45(5):1548-54. PMID: 6347063.
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    480. Baker DA. Herpesvirus. Clin Obstet Gynecol. 1983 Mar; 26(1):165-72. PMID: 6301717.
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    481. Baker DA, Amstey MS. Herpes simplex virus: biology, epidemiology, and clinical infection. Semin Perinatol. 1983 Jan; 7(1):1-8. PMID: 6302910.
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    482. Baker DA, Thomas J, Epstein J, Possilico D, Stone ML. The effect of prostaglandins on the multiplication and cell-to-cell spread of herpes simplex virus type 2 in vitro. Am J Obstet Gynecol. 1982 Oct 01; 144(3):346-9. PMID: 6289665.
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    483. Baker DA, Phillips CA. Maternal and neonatal infection with coxsackievirus. Obstet Gynecol. 1980 Mar; 55(3 Suppl):12S-15S. PMID: 6244522.
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    484. Baker DA, Phillips CA, Roessner K, Albertini RJ, Mann LI. Suppression by progesterone of nonspecific in vitro lymphocyte stimulation in mice as a mechanism for the enhancement of herpes simplex virus type 2 vaginal infection. Am J Obstet Gynecol. 1980 Feb 15; 136(4):440-5. PMID: 6243861.
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    485. Gump DW, Horton EL, Baker DA. Genital mycoplasmas and inhibitory substances in amniotic fluid: a negative result. Am J Obstet Gynecol. 1979 Oct 01; 135(3):429. PMID: 484637.
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    486. Baker DA, Phillips CA. Association of Legionnaires' disease and pregnancy. Am J Obstet Gynecol. 1979 May 15; 134(2):227-8. PMID: 453252.
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    487. Baker DA, Mead PB, Gallant JM, Hayward RG, Hamel AJ. Water-borne contamination of intrauterine pressure transducers. Am J Obstet Gynecol. 1979 Apr 15; 133(8):923-4. PMID: 434037.
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    488. Baker DA, Plotkin SA. Genital herpes simplex virus (HSV) isolation during pregnancy. Obstet Gynecol. 1979 Mar; 53(3 Suppl):9S-12S. PMID: 218152.
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    489. Baker DA, Plotkin SA. Enhancement of vaginal infection in mice by herpes simplex virus type II with progesterone. Proc Soc Exp Biol Med. 1978 Jun; 158(2):131-4. PMID: 209470.
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    490. Baker DA, Plotkin SA. Herpes simplex virus type 2 infection of neonatal mice. Infection. 1978; 6(4):158-61. PMID: 211091.
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