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Timothy Lee Scherr

TitleAssoc Director-Faculty
InstitutionUniversity of Colorado Boulder
DepartmentCollege Engineering & App Sci

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Graham S, Vu QD, Jahanifar M, Weigert M, Schmidt U, Zhang W, Zhang J, Yang S, Xiang J, Wang X, Rumberger JL, Baumann E, Hirsch P, Liu L, Hong C, Aviles-Rivero AI, Jain A, Ahn H, Hong Y, Azzuni H, Xu M, Yaqub M, Blache MC, Pi?gu B, Vernay B, Scherr T, B?hland M, L?ffler K, Li J, Ying W, Wang C, Snead D, Raza SEA, Minhas F, Rajpoot NM. CoNIC Challenge: Pushing the frontiers of nuclear detection, segmentation, classification and counting. Med Image Anal. 2024 Feb; 92:103047. PMID: 38157647.
      View in: PubMed
    2. Ma?ka M, Ulman V, Delgado-Rodriguez P, G?mez-de-Mariscal E, Necasov? T, Guerrero Pe?a FA, Ren TI, Meyerowitz EM, Scherr T, L?ffler K, Mikut R, Guo T, Wang Y, Allebach JP, Bao R, Al-Shakarji NM, Rahmon G, Toubal IE, Palaniappan K, Lux F, Matula P, Sugawara K, Magnusson KEG, Aho L, Cohen AR, Arbelle A, Ben-Haim T, Raviv TR, Isensee F, J?ger PF, Maier-Hein KH, Zhu Y, Ederra C, Urbiola A, Meijering E, Cunha A, Mu?oz-Barrutia A, Kozubek M, Ortiz-de-Sol?rzano C. The Cell Tracking Challenge: 10?years of objective benchmarking. Nat Methods. 2023 07; 20(7):1010-1020. PMID: 37202537.
      View in: PubMed
    3. Scherr T, Seiffarth J, Wollenhaupt B, Neumann O, Schilling MP, Kohlheyer D, Scharr H, N?h K, Mikut R. microbeSEG: A deep learning software tool with OMERO data management for efficient and accurate cell segmentation. PLoS One. 2022; 17(11):e0277601. PMID: 36445903.
      View in: PubMed
    4. B?hland M, Tharun L, Scherr T, Mikut R, Hagenmeyer V, Thompson LDR, Perner S, Reischl M. Machine learning methods for automated classification of tumors with papillary thyroid carcinoma-like nuclei: A quantitative analysis. PLoS One. 2021; 16(9):e0257635. PMID: 34550999.
      View in: PubMed
    5. L?ffler K, Scherr T, Mikut R. A graph-based cell tracking algorithm with few manually tunable parameters and automated segmentation error correction. PLoS One. 2021; 16(9):e0249257. PMID: 34492015.
      View in: PubMed
    6. Scherr T, L?ffler K, B?hland M, Mikut R. Cell segmentation and tracking using CNN-based distance predictions and a graph-based matching strategy. PLoS One. 2020; 15(12):e0243219. PMID: 33290432.
      View in: PubMed
    7. Scherr T, Streule K, Bartschat A, B?hland M, Stegmaier J, Reischl M, Orian-Rousseau V, Mikut R. BeadNet: deep learning-based bead detection and counting in low-resolution microscopy images. Bioinformatics. 2020 11 01; 36(17):4668-4670. PMID: 32589734.
      View in: PubMed
    8. Takamiya M, Stegmaier J, Kobitski AY, Schott B, Weger BD, Margariti D, Cereceda Delgado AR, Gourain V, Scherr T, Yang L, Sorge S, Otte JC, Hartmann V, van Wezel J, Stotzka R, Reinhard T, Schlunck G, Dickmeis T, Rastegar S, Mikut R, Nienhaus GU, Str?hle U. Pax6 organizes the anterior eye segment by guiding two distinct neural crest waves. PLoS Genet. 2020 06; 16(6):e1008774. PMID: 32555736.
      View in: PubMed
    9. Sheshachala S, Gr?sche M, Scherr T, Hu Y, Sun P, Bartschat A, Mikut R, Niemeyer CM. Segregation of Dispersed Silica Nanoparticles in Microfluidic Water-in-Oil Droplets: A Kinetic Study. Chemphyschem. 2020 05 18; 21(10):1070-1078. PMID: 32142187.
      View in: PubMed
    10. Bartschat A, Allgeier S, Bohn S, Scherr T, Blessing D, Reichert KM, Reischl M, Stachs O, Koehler B, Mikut R. [Digital Image Processing and Deep Neural Networks in Ophthalmology - Current Trends]. Klin Monbl Augenheilkd. 2019 Dec; 236(12):1399-1406. PMID: 31671462.
      View in: PubMed
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