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Amaresh Chandra Panda

TitlePost-Doctoral Fellow
InstitutionUniversity of Colorado Denver - Anschutz Medical Campus
DepartmentSOM-BioChem&Molecular Genetics

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Panda AC, De S, Grammatikakis I, Munk R, Yang X, Piao Y, Dudekula DB, Abdelmohsen K, Gorospe M. High-purity circular RNA isolation method (RPAD) reveals vast collection of intronic circRNAs. Nucleic Acids Res. 2017 Apr 21. PMID: 28444238.
      View in: PubMed
    2. Panda AC, Grammatikakis I, Kim KM, De S, Martindale JL, Munk R, Yang X, Abdelmohsen K, Gorospe M. Identification of senescence-associated circular RNAs (SAC-RNAs) reveals senescence suppressor CircPVT1. Nucleic Acids Res. 2017 Apr 20; 45(7):4021-4035. PMID: 27928058.
      View in: PubMed
    3. Panda AC, Martindale JL, Gorospe M. Polysome Fractionation to Analyze mRNA Distribution Profiles. Bio Protoc. 2017 Feb 05; 7(3). PMID: 28516123.
      View in: PubMed
    4. Abdelmohsen K, Panda AC, Munk R, Grammatikakis I, Dudekula DB, De S, Kim J, Noh JH, Kim KM, Martindale JL, Gorospe M. Identification of HuR target circular RNAs uncovers suppression of PABPN1 translation by CircPABPN1. RNA Biol. 2017 Mar 04; 14(3):361-369. PMID: 28080204.
      View in: PubMed
    5. Panda AC, Abdelmohsen K, Gorospe M. RT-qPCR Detection of Senescence-Associated Circular RNAs. Methods Mol Biol. 2017; 1534:79-87. PMID: 27812869.
      View in: PubMed
    6. Panda AC, Martindale JL, Gorospe M. Affinity Pulldown of Biotinylated RNA for Detection of Protein-RNA Complexes. Bio Protoc. 2016 Dec 20; 6(24). PMID: 28516119.
      View in: PubMed
    7. Panda AC, Grammatikakis I, Munk R, Gorospe M, Abdelmohsen K. Emerging roles and context of circular RNAs. Wiley Interdiscip Rev RNA. 2017 Mar; 8(2). PMID: 27612318.
      View in: PubMed
    8. Di Francesco A, Di Germanio C, Panda AC, Huynh P, Peaden R, Navas-Enamorado I, Bastian P, Lehrmann E, Diaz-Ruiz A, Ross D, Siegel D, Martindale JL, Bernier M, Gorospe M, Abdelmohsen K, de Cabo R. Novel RNA-binding activity of NQO1 promotes SERPINA1 mRNA translation. Free Radic Biol Med. 2016 Oct; 99:225-233. PMID: 27515817.
      View in: PubMed
    9. Noh JH, Kim KM, Abdelmohsen K, Yoon JH, Panda AC, Munk R, Kim J, Curtis J, Moad CA, Wohler CM, Indig FE, de Paula W, Dudekula DB, De S, Piao Y, Yang X, Martindale JL, de Cabo R, Gorospe M. HuR and GRSF1 modulate the nuclear export and mitochondrial localization of the lncRNA RMRP. Genes Dev. 2016 05 15; 30(10):1224-39. PMID: 27198227; PMCID: PMC4888842 [Available on 11/15/16].
    10. Grammatikakis I, Zhang P, Panda AC, Kim J, Maudsley S, Abdelmohsen K, Yang X, Martindale JL, MotiƱo O, Hutchison ER, Mattson MP, Gorospe M. Alternative Splicing of Neuronal Differentiation Factor TRF2 Regulated by HNRNPH1/H2. Cell Rep. 2016 05 03; 15(5):926-34. PMID: 27117401; PMCID: PMC4856555.
    11. Panda AC, Abdelmohsen K, Martindale JL, Di Germanio C, Yang X, Grammatikakis I, Noh JH, Zhang Y, Lehrmann E, Dudekula DB, De S, Becker KG, White EJ, Wilson GM, de Cabo R, Gorospe M. Novel RNA-binding activity of MYF5 enhances Ccnd1/Cyclin D1 mRNA translation during myogenesis. Nucleic Acids Res. 2016 Mar 18; 44(5):2393-408. PMID: 26819411; PMCID: PMC4797292.
    12. Dudekula DB, Panda AC, Grammatikakis I, De S, Abdelmohsen K, Gorospe M. CircInteractome: A web tool for exploring circular RNAs and their interacting proteins and microRNAs. RNA Biol. 2016; 13(1):34-42. PMID: 26669964; PMCID: PMC4829301 [Available on 12/15/16].
    13. Abdelmohsen K, Panda AC, De S, Grammatikakis I, Kim J, Ding J, Noh JH, Kim KM, Mattison JA, de Cabo R, Gorospe M. Circular RNAs in monkey muscle: age-dependent changes. Aging (Albany NY). 2015 Nov; 7(11):903-10. PMID: 26546448; PMCID: PMC4694061.
    14. Lee KP, Shin YJ, Panda AC, Abdelmohsen K, Kim JY, Lee SM, Bahn YJ, Choi JY, Kwon ES, Baek SJ, Kim SY, Gorospe M, Kwon KS. miR-431 promotes differentiation and regeneration of old skeletal muscle by targeting Smad4. Genes Dev. 2015 Aug 01; 29(15):1605-17. PMID: 26215566; PMCID: PMC4536309.
    15. Grammatikakis I, Panda AC, Abdelmohsen K, Gorospe M. Long noncoding RNAs(lncRNAs) and the molecular hallmarks of aging. Aging (Albany NY). 2014 Dec; 6(12):992-1009. PMID: 25543668; PMCID: PMC4298369.
    16. Abdelmohsen K, Panda AC, Kang MJ, Guo R, Kim J, Grammatikakis I, Yoon JH, Dudekula DB, Noh JH, Yang X, Martindale JL, Gorospe M. 7SL RNA represses p53 translation by competing with HuR. Nucleic Acids Res. 2014 Sep; 42(15):10099-111. PMID: 25123665; PMCID: PMC4150789.
    17. Panda AC, Sahu I, Kulkarni SD, Martindale JL, Abdelmohsen K, Vindu A, Joseph J, Gorospe M, Seshadri V. miR-196b-mediated translation regulation of mouse insulin2 via the 5'UTR. PLoS One. 2014; 9(7):e101084. PMID: 25003985; PMCID: PMC4086887.
    18. Panda AC, Abdelmohsen K, Yoon JH, Martindale JL, Yang X, Curtis J, Mercken EM, Chenette DM, Zhang Y, Schneider RJ, Becker KG, de Cabo R, Gorospe M. RNA-binding protein AUF1 promotes myogenesis by regulating MEF2C expression levels. Mol Cell Biol. 2014 Aug; 34(16):3106-19. PMID: 24891619; PMCID: PMC4135590.
    19. Panda AC, Grammatikakis I, Yoon JH, Abdelmohsen K. Posttranscriptional regulation of insulin family ligands and receptors. Int J Mol Sci. 2013 Sep 18; 14(9):19202-29. PMID: 24051403; PMCID: PMC3794829.
    20. Abdelmohsen K, Panda A, Kang MJ, Xu J, Selimyan R, Yoon JH, Martindale JL, De S, Wood WH, Becker KG, Gorospe M. Senescence-associated lncRNAs: senescence-associated long noncoding RNAs. Aging Cell. 2013 Oct; 12(5):890-900. PMID: 23758631; PMCID: PMC3773026.
    21. Chatterjee S, Panda AC, Berwal SK, Sreejith RK, Ritvika C, Seshadri V, Pal JK. Vimentin is a component of a complex that binds to the 5'-UTR of human heme-regulated eIF2a kinase mRNA and regulates its translation. FEBS Lett. 2013 Mar 01; 587(5):474-80. PMID: 23357686.
      View in: PubMed
    22. Kulkarni SD, Muralidharan B, Panda AC, Bakthavachalu B, Vindu A, Seshadri V. Glucose-stimulated translation regulation of insulin by the 5' UTR-binding proteins. J Biol Chem. 2011 Apr 22; 286(16):14146-56. PMID: 21357685; PMCID: PMC3077616.
    23. Panda AC, Kulkarni SD, Muralidharan B, Bakthavachalu B, Seshadri V. Novel splice variant of mouse insulin2 mRNA: implications for insulin expression. FEBS Lett. 2010 Mar 19; 584(6):1169-73. PMID: 20153322.
      View in: PubMed
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