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Charles W Caldwell

TitlePost-Doctoral Fellow
InstitutionUniversity of Colorado Denver - Anschutz Medical Campus
DepartmentSOM-MED

    Collapse Research 
    Collapse research activities and funding
    T15LM007089     (SIMOES, EDUARDO)Jul 1, 1992 - Jun 30, 2013
    NIH/NLM
    MU Biomedical Informatics Research Training Program
    Role: Co-Principal Investigator

    R01CA100055     (CALDWELL, CHARLES W)Apr 16, 2003 - Mar 31, 2008
    NIH/NCI
    DNA Methylation in Non-Hodgkin's Lymphomas
    Role: Principal Investigator

    R21CA097880     (CALDWELL, CHARLES W)May 10, 2003 - Apr 30, 2004
    NIH/NCI
    Epigenetic Signature of Non-Hodgkin's Lymphomas
    Role: Principal Investigator

    R33CA097880     (CALDWELL, CHARLES W)May 10, 2003 - Apr 30, 2008
    NIH/NCI
    Epigenetic Signature of Non-Hodgkin's Lymphomas
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Jankowska AM, Millward CL, Caldwell CW. The potential of DNA modifications as biomarkers and therapeutic targets in oncology. Expert Rev Mol Diagn. 2015; 15(10):1325-37. PMID: 26394702.
      View in: PubMed
    2. Wang Z, Cao R, Taylor K, Briley A, Caldwell C, Cheng J. The properties of genome conformation and spatial gene interaction and regulation networks of normal and malignant human cell types. PLoS One. 2013; 8(3):e58793. PMID: 23536826; PMCID: PMC3594155.
    3. Taylor KH, Briley A, Wang Z, Cheng J, Shi H, Caldwell CW. Aberrant epigenetic gene regulation in lymphoid malignancies. Semin Hematol. 2013 Jan; 50(1):38-47. PMID: 23507482.
      View in: PubMed
    4. Tegge AN, Caldwell CW, Xu D. Pathway correlation profile of gene-gene co-expression for identifying pathway perturbation. PLoS One. 2012; 7(12):e52127. PMID: 23284898; PMCID: PMC3527387.
    5. Shukla R, Chanda N, Zambre A, Upendran A, Katti K, Kulkarni RR, Nune SK, Casteel SW, Smith CJ, Vimal J, Boote E, Robertson JD, Kan P, Engelbrecht H, Watkinson LD, Carmack TL, Lever JR, Cutler CS, Caldwell C, Kannan R, Katti KV. Laminin receptor specific therapeutic gold nanoparticles (198AuNP-EGCg) show efficacy in treating prostate cancer. Proc Natl Acad Sci U S A. 2012 Jul 31; 109(31):12426-31. PMID: 22802668; PMCID: PMC3411993.
    6. Pei L, Choi JH, Liu J, Lee EJ, McCarthy B, Wilson JM, Speir E, Awan F, Tae H, Arthur G, Schnabel JL, Taylor KH, Wang X, Xu D, Ding HF, Munn DH, Caldwell C, Shi H. Genome-wide DNA methylation analysis reveals novel epigenetic changes in chronic lymphocytic leukemia. Epigenetics. 2012 Jun 01; 7(6):567-78. PMID: 22534504; PMCID: PMC3398986.
    7. Shin D, Arthur G, Caldwell C, Popescu M, Petruc M, Diaz-Arias A, Shyu CR. A pathologist-in-the-loop IHC antibody test selection using the entropy-based probabilistic method. J Pathol Inform. 2012; 3:1. PMID: 22439121; PMCID: PMC3307231.
    8. Arthur GL, Caldwell CW. Methylation of CD44 as a candidate biomarker in lymphomas. Epigenomics. 2011 Apr; 3(2):142-3. PMID: 22232792.
      View in: PubMed
    9. Arthur GL, Caldwell CW. DNA hypomethylation in a spectrum of plasma cell disorders. Epigenomics. 2011 Apr; 3(2):143-4. PMID: 22232794.
      View in: PubMed
    10. Arthur GL, Caldwell CW. Can promoter methylation in peripheral blood cells predict the development of cancer? Epigenomics. 2011 Apr; 3(2):141-2. PMID: 22122278.
      View in: PubMed
    11. Choi JH, Li Y, Guo J, Pei L, Rauch TA, Kramer RS, Macmil SL, Wiley GB, Bennett LB, Schnabel JL, Taylor KH, Kim S, Xu D, Sreekumar A, Pfeifer GP, Roe BA, Caldwell CW, Bhalla KN, Shi H. Genome-wide DNA methylation maps in follicular lymphoma cells determined by methylation-enriched bisulfite sequencing. PLoS One. 2010 Sep 29; 5(9). PMID: 20927367; PMCID: PMC2947499.
    12. Suter JD, Howard DJ, Shi H, Caldwell CW, Fan X. Label-free DNA methylation analysis using opto-fluidic ring resonators. Biosens Bioelectron. 2010 Nov 15; 26(3):1016-20. PMID: 20846848.
      View in: PubMed
    13. Taylor KH, Shi H, Caldwell CW. Next generation sequencing: advances in characterizing the methylome. Genes (Basel). 2010 Jul 01; 1(2):143-65. PMID: 24710039; PMCID: PMC3954092.
    14. Villamil JA, Henry CJ, Hahn AW, Bryan JN, Tyler JW, Caldwell CW. Hormonal and sex impact on the epidemiology of canine lymphoma. J Cancer Epidemiol. 2009; 2009:591753. PMID: 20445802; PMCID: PMC2859020.
    15. Bennett LB, Taylor KH, Arthur GL, Rahmatpanah FB, Hooshmand SI, Caldwell CW. Epigenetic regulation of WNT signaling in chronic lymphocytic leukemia. Epigenomics. 2010 Feb 01; 2(1):53-70. PMID: 20473358.
      View in: PubMed
    16. Wang MX, Wang HY, Zhao X, Srilatha N, Zheng D, Shi H, Ning J, Duff DJ, Taylor KH, Gruner BA, Caldwell CW. Molecular detection of B-cell neoplasms by specific DNA methylation biomarkers. Int J Clin Exp Pathol. 2010 Jan 28; 3(3):265-79. PMID: 20224725; PMCID: PMC2836504.
    17. Zhu H, Dale PS, Caldwell CW, Fan X. Rapid and label-free detection of breast cancer biomarker CA15-3 in clinical human serum samples with optofluidic ring resonator sensors. Anal Chem. 2009 Dec 15; 81(24):9858-65. PMID: 19911811.
      View in: PubMed
    18. Bryan JN, Jabbes M, Berent LM, Arthur GL, Taylor KH, Rissetto KC, Henry CJ, Rahmatpanah F, Rankin WV, Villamil JA, Lewis MR, Caldwell CW. Hypermethylation of the DLC1 CpG island does not alter gene expression in canine lymphoma. BMC Genet. 2009 Nov 13; 10:73. PMID: 19912643; PMCID: PMC2784477.
    19. Rahmatpanah FB, Carstens S, Hooshmand SI, Welsh EC, Sjahputera O, Taylor KH, Bennett LB, Shi H, Davis JW, Arthur GL, Shanafelt TD, Kay NE, Wooldridge JE, Caldwell CW. Large-scale analysis of DNA methylation in chronic lymphocytic leukemia. Epigenomics. 2009 Oct; 1(1):39-61. PMID: 20495622.
      View in: PubMed
    20. Bennett LB, Schnabel JL, Kelchen JM, Taylor KH, Guo J, Arthur GL, Papageorgio CN, Shi H, Caldwell CW. DNA hypermethylation accompanied by transcriptional repression in follicular lymphoma. Genes Chromosomes Cancer. 2009 Sep; 48(9):828-41. PMID: 19530241; PMCID: PMC2738630.
    21. Suter JD, Howard DJ, Shi H, Caldwell CW, Fan X. Label-free analysis of DNA methylation using optofluidic ring resonators. Conf Proc IEEE Eng Med Biol Soc. 2009; 2009:2760-2. PMID: 19964593.
      View in: PubMed
    22. Pena-Hernandez KE, Pena-Hernandez KE, Mahamaneerat WK, Mahamaneerat WK, Kobayashi T, Shyu CR, Arthur G, Caldwell CW, Caldwell CW. Mapping biomedical literature with WNT signaling pathway. AMIA Annu Symp Proc. 2008 Nov 06; 1089. PMID: 18999226.
      View in: PubMed
    23. Papageorgio C, Harrison R, Rahmatpanah FB, Taylor K, Davis W, Caldwell CW. Algorithmic discovery of methylation "hot spots" in DNA from lymphoma patients. Cancer Inform. 2008; 6:449-53. PMID: 19259422; PMCID: PMC2623312.
    24. Suter JD, White IM, Zhu H, Shi H, Caldwell CW, Fan X. Label-free quantitative DNA detection using the liquid core optical ring resonator. Biosens Bioelectron. 2008 Feb 28; 23(7):1003-9. PMID: 18036809.
      View in: PubMed
    25. Taylor KH, Kramer RS, Davis JW, Guo J, Duff DJ, Xu D, Caldwell CW, Shi H. Ultradeep bisulfite sequencing analysis of DNA methylation patterns in multiple gene promoters by 454 sequencing. Cancer Res. 2007 Sep 15; 67(18):8511-8. PMID: 17875690.
      View in: PubMed
    26. Shi H, Wang MX, Caldwell CW. CpG islands: their potential as biomarkers for cancer. Expert Rev Mol Diagn. 2007 Sep; 7(5):519-31. PMID: 17892361.
      View in: PubMed
    27. Bryan JN, Keeler MR, Henry CJ, Bryan ME, Hahn AW, Caldwell CW. A population study of neutering status as a risk factor for canine prostate cancer. Prostate. 2007 Aug 01; 67(11):1174-81. PMID: 17516571.
      View in: PubMed
    28. Lisle AE, Caldwell CW. Refractory cytopenia with multilineage dysplasia and eosinophilia. Am J Hematol. 2007 Jul; 82(7):682-3. PMID: 17315218.
      View in: PubMed
    29. Sjahputera O, Keller JM, Davis JW, Taylor KH, Rahmatpanah F, Shi H, Anderson DT, Blisard SN, Luke RH, Popescu M, Arthur GC, Caldwell CW. Relational analysis of CpG islands methylation and gene expression in human lymphomas using possibilistic C-means clustering and modified cluster fuzzy density. IEEE/ACM Trans Comput Biol Bioinform. 2007 Apr-Jun; 4(2):176-89. PMID: 17473312.
      View in: PubMed
    30. Taylor KH, Pena-Hernandez KE, Davis JW, Arthur GL, Duff DJ, Shi H, Rahmatpanah FB, Sjahputera O, Caldwell CW. Large-scale CpG methylation analysis identifies novel candidate genes and reveals methylation hotspots in acute lymphoblastic leukemia. Cancer Res. 2007 Mar 15; 67(6):2617-25. PMID: 17363581.
      View in: PubMed
    31. Weight RM, Viator JA, Dale PS, Caldwell CW, Lisle AE. Photoacoustic detection of metastatic melanoma cells in the human circulatory system. Opt Lett. 2006 Oct 15; 31(20):2998-3000. PMID: 17001379.
      View in: PubMed
    32. Shi H, Guo J, Duff DJ, Rahmatpanah F, Chitima-Matsiga R, Al-Kuhlani M, Taylor KH, Sjahputera O, Andreski M, Wooldridge JE, Caldwell CW. Discovery of novel epigenetic markers in non-Hodgkin's lymphoma. Carcinogenesis. 2007 Jan; 28(1):60-70. PMID: 16774933.
      View in: PubMed
    33. Guo J, Burger M, Nimmrich I, Maier S, Becker E, Genc B, Duff D, Rahmatpanah F, Chitma-Matsiga R, Shi H, Berlin K, Huang TH, Caldwell CW. Differential DNA methylation of gene promoters in small B-cell lymphomas. Am J Clin Pathol. 2005 Sep; 124(3):430-9. PMID: 16191512.
      View in: PubMed
    34. Zhang LN, Karp P, Gerard CJ, Pastor E, Laux D, Munson K, Yan Z, Liu X, Godwin S, Thomas CP, Zabner J, Shi H, Caldwell CW, Peluso R, Carter B, Engelhardt JF. Dual therapeutic utility of proteasome modulating agents for pharmaco-gene therapy of the cystic fibrosis airway. Mol Ther. 2004 Dec; 10(6):990-1002. PMID: 15564131.
      View in: PubMed
    35. Yang H, Chen CM, Yan P, Huang TH, Shi H, Burger M, Nimmrich I, Maier S, Berlin K, Caldwell CW. The androgen receptor gene is preferentially hypermethylated in follicular non-Hodgkin's lymphomas. Clin Cancer Res. 2003 Sep 15; 9(11):4034-42. PMID: 14519624.
      View in: PubMed
    36. Chen CM, Chen HL, Hsiau TH, Hsiau AH, Shi H, Brock GJ, Wei SH, Caldwell CW, Yan PS, Huang TH. Methylation target array for rapid analysis of CpG island hypermethylation in multiple tissue genomes. Am J Pathol. 2003 Jul; 163(1):37-45. PMID: 12819009; PMCID: PMC1868173.
    37. Shi H, Maier S, Nimmrich I, Yan PS, Caldwell CW, Olek A, Huang TH. Oligonucleotide-based microarray for DNA methylation analysis: principles and applications. J Cell Biochem. 2003 Jan 01; 88(1):138-43. PMID: 12461783.
      View in: PubMed
    38. Asare AL, Ellis JS, Caldwell CW. A decision-support system for flow cytometry immunophenotyping. Am J Clin Pathol. 2002 Oct; 118(4):567-73. PMID: 12375644.
      View in: PubMed
    39. Shi H, Yan PS, Chen CM, Rahmatpanah F, Lofton-Day C, Caldwell CW, Huang TH. Expressed CpG island sequence tag microarray for dual screening of DNA hypermethylation and gene silencing in cancer cells. Cancer Res. 2002 Jun 01; 62(11):3214-20. PMID: 12036936.
      View in: PubMed
    40. Kaur H, Hainsworth DP, Caldwell CW, Hamm CW, Madsen RW. Interpretation of flow cytometric measurement of lymphocytes after fluorescein angiography. Retina. 2002 Feb; 22(1):44-7. PMID: 11884877.
      View in: PubMed
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